Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c19
         (419 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14160.3 68417.m02185 transport protein, putative similar to ...    27   3.9  
At4g14160.2 68417.m02186 transport protein, putative similar to ...    27   3.9  
At4g14160.1 68417.m02184 transport protein, putative similar to ...    27   3.9  
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim...    27   5.2  
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    26   9.0  
At4g08370.1 68417.m01382 proline-rich extensin-like family prote...    26   9.0  

>At4g14160.3 68417.m02185 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 620

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 187 KAHINELNIKLLSTSFVFKHSKPIT 113
           +AH++EL    +S  FVFK +K +T
Sbjct: 177 QAHVHELGFSEMSKVFVFKGNKEVT 201


>At4g14160.2 68417.m02186 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 772

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 187 KAHINELNIKLLSTSFVFKHSKPIT 113
           +AH++EL    +S  FVFK +K +T
Sbjct: 177 QAHVHELGFSEMSKVFVFKGNKEVT 201


>At4g14160.1 68417.m02184 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 621

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 187 KAHINELNIKLLSTSFVFKHSKPIT 113
           +AH++EL    +S  FVFK +K +T
Sbjct: 177 QAHVHELGFSEMSKVFVFKGNKEVT 201


>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
           similar to BP-80 vacuolar sorting receptor [Pisum
           sativum] GI:1737222
          Length = 618

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 9   LLILLGHTMGAYTDYRYAKSCYMVILFVSVMS 104
           L  + G ++GAY  Y+Y    YM    VS+MS
Sbjct: 571 LTAIAGISLGAYIFYKYHLQSYMDSEIVSIMS 602


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 53  SICQIMLYGYIVCFSYEFYYCY 118
           S C  M+YG + C   +F+ C+
Sbjct: 400 SACDQMVYGSLSCVKLDFFLCF 421


>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 350

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 255 QSIQVVPFSYNDPPPP 302
           +S+  +PF Y+ PPPP
Sbjct: 194 ESVPRIPFIYSSPPPP 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,768,629
Number of Sequences: 28952
Number of extensions: 114225
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)