Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c18
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    29   0.90 
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   3.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.3  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.4  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   8.4  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   8.4  

>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 359 TEMFPECVRNGTYTVTTNTWS-GIKGLYGLSRSVMW 463
           T M PE +R G YTV ++ WS GI  +   ++ + W
Sbjct: 224 TYMSPERIRGGKYTVKSDIWSLGISIIELATQELPW 259


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 421 RPCICCNCVCAIP 383
           RPCICCN V   P
Sbjct: 81  RPCICCNSVLRYP 93


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 576 LVPNNTCFCCDFSISAT*ALSTSNMTGANNITDELATTHI 457
           + P+NT +      S++   S+S +T  +N+T E+++T +
Sbjct: 584 ITPSNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSL 623


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 639 HRISNHLHTDLSHVKHNNVVQHSYQNK 719
           H   N + +DL H   NN V H + ++
Sbjct: 410 HSNENTMQSDLQHQNGNNAVNHHHSSR 436


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 498 GANNITDELATTHITERDRPY 436
           G++ + D LA T I +RD PY
Sbjct: 56  GSSTLVDPLADTSICKRDLPY 76


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 365 MFPECVRNGTYTVTTNTWS 421
           M PE +  G+YT++++ WS
Sbjct: 246 MAPERISGGSYTISSDIWS 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,235
Number of Sequences: 5004
Number of extensions: 55358
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)