Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c18
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical ...    82   3e-16
U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z71262-1|CAA95813.1|  418|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical
           protein W10D9.5 protein.
          Length = 109

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 40/93 (43%), Positives = 66/93 (70%), Gaps = 5/93 (5%)
 Frame = +2

Query: 308 EYDDEPD----ETLSERLWGLTEMFPECVRNGTY-TVTTNTWSGIKGLYGLSRSVMWVVA 472
           ++DD PD    ET+ ER+ GL EMFP+ +R+  + TV  + W G+KG++ L++S +WVV+
Sbjct: 7   DFDDIPDSEIHETIVERIEGLGEMFPDALRSAVHSTVDWSIW-GVKGVFSLTKSTIWVVS 65

Query: 473 SSSVILFAPVIFEVERAQVAEMEKSQQKQVLLG 571
           ++S+I F P I E ER+ + + + +QQ+Q+LLG
Sbjct: 66  TTSLIAFLPYIIEKERSDLEKTQVAQQRQMLLG 98


>U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical
           protein C28G1.6 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +3

Query: 576 TQLWQDPCLRCHQCHDKLRLSHRISNHLHTDLSHVKHNNVVQHSYQNKVI 725
           ++L+++P ++C  C   + +  R  N+L T+   +K    ++ S +NK I
Sbjct: 35  SKLFENPEVKCPTCRQPIEVKDRDVNNLVTNFGMLKIIREIEESGKNKKI 84


>Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2b protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 259 LGGVIADCWIS*WTFERVRR*TR*NSF*KIVGSDRNVPRVCKEWHIHSYNKYM 417
           LG   +D W +  +F  +    R  ++ KIV +D ++P    +W I   NKY+
Sbjct: 254 LGCATSDQWDNGQSFGTILTCLRNVTYDKIVAADNSLPGHRMKWSIVQDNKYL 306


>Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2a protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 259 LGGVIADCWIS*WTFERVRR*TR*NSF*KIVGSDRNVPRVCKEWHIHSYNKYM 417
           LG   +D W +  +F  +    R  ++ KIV +D ++P    +W I   NKY+
Sbjct: 254 LGCATSDQWDNGQSFGTILTCLRNVTYDKIVAADNSLPGHRMKWSIVQDNKYL 306


>Z71262-1|CAA95813.1|  418|Caenorhabditis elegans Hypothetical
           protein F22D6.1 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +2

Query: 143 NMLMDLTDELELSDSGM--ESLTTSKDDTPERRPEQY 247
           N L+ +TD++++SD G+  +  T   DDT ++ P ++
Sbjct: 274 NCLLSITDQIKISDFGLSDDKRTEMHDDTLDKVPVKW 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,743
Number of Sequences: 27780
Number of extensions: 308786
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)