Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c17
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.67 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 275 SVSLGGVMSKFLILYGPVFICAL 207
           S +LG +MS F++ + P F+ AL
Sbjct: 371 STTLGIIMSAFIVCWLPFFVLAL 393


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 559 KELVKRQNNNHFAYH 603
           K   K QNNNH+  H
Sbjct: 112 KNQYKNQNNNHYTSH 126


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +1

Query: 475 GEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYHTCNKSWR 624
           GE L DR GS+S +    +    +  +  E +     N   Y    + W+
Sbjct: 423 GEGLADRRGSESSDSVLLSPEASKATEAVEFIAEHLRNEDLYIQTREDWK 472


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 DYNENVIIGYKGYYQAYAYNGGSL 381
           DY + +  GY+G  +  A+NGG +
Sbjct: 229 DYPD-IYSGYEGALRCLAHNGGEI 251


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 DYNENVIIGYKGYYQAYAYNGGSL 381
           DY + +  GY+G  +  A+NGG +
Sbjct: 229 DYPD-IYSGYEGALRCLAHNGGEI 251


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 DYNENVIIGYKGYYQAYAYNGGSL 381
           DY + +  GY+G  +  A+NGG +
Sbjct: 229 DYPD-IYSGYEGALRCLAHNGGEI 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,679
Number of Sequences: 438
Number of extensions: 3565
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)