Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c15
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    27   2.3  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   3.9  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.9  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   5.2  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   6.9  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   6.9  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   6.9  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   6.9  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   6.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   9.1  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   9.1  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    25   9.1  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 353 CIFSFCGFHCKP*KSLQVSWLP 288
           C+     +HCKP   L V W+P
Sbjct: 671 CLMLQHSYHCKPNSKLNVFWMP 692


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 225 TIAGALTYPTRSQDEVLPNQPRQPRNLQGLL 317
           TI+   + PT+ ++ V PN P  P + Q LL
Sbjct: 9   TISPTFSTPTKKRNLVFPNSPITPLHQQALL 39


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 559  IYSRTLSKAACTSSGSGSPNCMLRILSVFVRILMAFSNTSAM 434
            +YSR     A  SSG     C+ R+L    RIL+    T+++
Sbjct: 1352 LYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASV 1393


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +3

Query: 399 FLEDALKSLTVNIAEVLLNAIKILTNTERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTA 578
           FL   +  L V I ++ +  +KI+ N +++ S++   P  E      DN    +++  +A
Sbjct: 301 FLSQVMYYLEVAI-DITIPPVKIIVNFDKVDSLRVQSPRSEKATIELDNYNPSLENCSSA 359


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 375 PIDEERRKFLEDALKS-LTVNIAEVLLNAIKILTNTERIRSIQFGEPLPEDVQAAFDNVL 551
           P++ E+  F ED LKS LT   +EVLL+ +    +   I+  +  E L ++ ++  DN  
Sbjct: 413 PLNVEKGSF-EDTLKSSLTKGNSEVLLDDLSD-PSVSSIKGNKTNEELEKEFKSTSDNFG 470

Query: 552 EYI 560
           ++I
Sbjct: 471 KHI 473


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -3

Query: 287 RLIW*DFILTSCRISQGSGNRXIXRXIRTHILETQIXC--EISLVRNGIRN*TVKPTESR 114
           RLIW + +     +S   G        +T++ E    C  +IS   N I + + + TE+ 
Sbjct: 365 RLIWSELLFFDRMLSMSLGRPFAISNDQTNVHEPSNVCDIQISSQSNCIPDPSYERTEAS 424

Query: 113 LVLFKSLSSXFI 78
             +FK+  S  I
Sbjct: 425 FTIFKAKLSKVI 436


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 559  IYSRTLSKAACTSSGSGSPNCMLRILSVFVRILMAFSNTSAM 434
            +YSR     A  SSG     C+ R L    R+L+    T+A+
Sbjct: 1350 LYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAV 1391


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 456 RSVTLQQCSLSDSLGHLQGICVFLHQLVPI 367
           +S++     L+DS+  L GIC+F+  ++ +
Sbjct: 580 KSISASLRDLNDSISKLDGICMFIVAVITL 609


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 303 LQGLLRFAMEATKAEDAPGNSELGPIDEERRKFLEDALKSLTVNIA 440
           LQGLLR  ++  K     G S    ++E+    L   L+ +  N+A
Sbjct: 503 LQGLLRMVVDNNKKVQEAGCSAFAILEEQAGPSLVPYLEPILTNLA 548


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 472 QTLK-GFXAYSLGNHYQKTYRRLLTMSLNILTILIQXMTSIRWEGL 606
           Q+LK G  A S GNH Q       T+ +    ++ Q    I+W  +
Sbjct: 158 QSLKNGVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNV 203


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 483 RIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTAXDFYKMGG 602
           R+  +QFG   PE++++     +E+ + +D +    ++GG
Sbjct: 15  RVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGG 54


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 454 TPSKFSQTLKGFXAYSLGNHY 516
           TPS+FS    G   Y+ G HY
Sbjct: 63  TPSEFSSNYGGRREYNRGGHY 83


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 318 RFAMEATKAEDAPGNSELGPIDEERRKFLEDALKSLTVNIAEVL 449
           R      + E++ GN+    + +E RK +ED L  +  ++  VL
Sbjct: 62  RIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVL 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,434
Number of Sequences: 5004
Number of extensions: 43186
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)