Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c15
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243...    40   0.002
03_02_0515 - 9046450-9046996,9047125-9047227,9047319-9047540,904...    30   1.3  
02_03_0392 + 18485837-18485845,18486042-18486119,18486450-184865...    28   5.4  
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732...    27   9.4  
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980...    27   9.4  

>03_06_0495 +
           34323082-34323173,34323600-34323742,34324265-34324315,
           34324405-34324626,34324731-34324833,34325156-34325552,
           34326564-34326735,34326995-34327089,34327246-34327455
          Length = 494

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/82 (20%), Positives = 46/82 (56%)
 Frame = +3

Query: 357 GNSELGPIDEERRKFLEDALKSLTVNIAEVLLNAIKILTNTERIRSIQFGEPLPEDVQAA 536
           G ++   + EE +K+  +A+++ T+++ + +    +++   + +  +Q     PE+++  
Sbjct: 23  GTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVMKTPDDV--LQSQGVTPENIEDM 80

Query: 537 FDNVLEYIDDIDTAXDFYKMGG 602
            D + E+++ ID A D + +GG
Sbjct: 81  LDELQEHVESIDMANDLHSIGG 102


>03_02_0515 -
           9046450-9046996,9047125-9047227,9047319-9047540,
           9048350-9048400,9048966-9049168,9049276-9049361
          Length = 403

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/74 (22%), Positives = 37/74 (50%)
 Frame = +3

Query: 381 DEERRKFLEDALKSLTVNIAEVLLNAIKILTNTERIRSIQFGEPLPEDVQAAFDNVLEYI 560
           +EERR   E   + + V++    +  I +L +T  +  ++     P+D++     +  ++
Sbjct: 49  EEERRWLAEAVERHMMVDVVS-RMREIALLMSTP-LSVLEAHGITPDDIEGLLAELQVHV 106

Query: 561 DDIDTAXDFYKMGG 602
           + ID A D + +GG
Sbjct: 107 ESIDMANDLHSVGG 120


>02_03_0392 +
           18485837-18485845,18486042-18486119,18486450-18486550,
           18487000-18487087,18487753-18487897,18487968-18488050,
           18488189-18488254,18488572-18488628,18489084-18489206,
           18489645-18489696,18489830-18489944,18490018-18490147
          Length = 348

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = +3

Query: 228 IAGALTYPTRSQDEVLPNQPRQPRNLQGLLRFAMEATKAEDAPGNSELGPIDEE 389
           IA A  YP  S    LP+  R  R + GLL FA  A KAE      E   + +E
Sbjct: 128 IASAFHYPVYS----LPSVHRLDRLVSGLLIFAKNADKAESFRQQIEASLLQKE 177


>10_08_1024 +
           22371260-22371481,22371514-22372188,22372291-22373236,
           22389377-22389552
          Length = 672

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 195 NMSSNXTXNXTIAGALTYPTRSQDEVLPNQPRQPRNLQGLLRFAMEATKAEDA 353
           N  S+ T +  IA A T   R +D V     + PR ++ +   A E TKAEDA
Sbjct: 334 NKISDITDDVIIA-AFTKGIRHEDLVGKFGRKPPRTVKQMFEKANEYTKAEDA 385


>06_03_1274 +
           28897491-28897707,28897804-28897935,28898029-28898096,
           28898216-28898280,28898468-28898534,28898630-28898917,
           28898995-28899102,28899236-28899487,28899918-28899997,
           28900092-28900185,28900728-28900810,28901319-28901873,
           28902085-28902616
          Length = 846

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +1

Query: 247 IRQEVKMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGTRNWDQLMK 387
           I    ++  Y++  G + + +  YG+Q+ P+ +  H G + +    K
Sbjct: 253 INDASELDGYRVLMGVRHSTRPHYGVQFHPESVATHYGRQIFQNFKK 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,894,235
Number of Sequences: 37544
Number of extensions: 261386
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)