Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c15
         (634 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061359-1|AAL28907.1|  306|Drosophila melanogaster LD28549p pro...    51   1e-06
AE014296-2180|ABC66152.1|  306|Drosophila melanogaster CG10973-P...    51   1e-06
AE014298-1623|AAF48046.1|  837|Drosophila melanogaster CG1745-PB...    28   9.1  
AE014296-2181|AAF49888.1|  255|Drosophila melanogaster CG10973-P...    28   9.1  

>AY061359-1|AAL28907.1|  306|Drosophila melanogaster LD28549p
           protein.
          Length = 306

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +3

Query: 276 PNQPRQPRNLQGLLRFAMEA--TKAEDAPGNSELGPIDEERRKFLEDALKSLTVNIAEVL 449
           PN PR   +LQ +L++ ++      E AP   +L   D ER +FL +AL ++TV+ A  L
Sbjct: 4   PNVPRGALSLQNVLKYTVQHHDPNPEAAP---KLETPDPERAQFLANALNAMTVDAAAAL 60

Query: 450 LNAIKILTNTERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTAXDFYKMGGFA 608
             A+ IL N+E        E   +D   + D +  +IDDID A    K+GG A
Sbjct: 61  KAALVIL-NSE--------ESSTDDQIESLDVIRSHIDDIDNAITLVKLGGTA 104


>AE014296-2180|ABC66152.1|  306|Drosophila melanogaster CG10973-PB,
           isoform B protein.
          Length = 306

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +3

Query: 276 PNQPRQPRNLQGLLRFAMEA--TKAEDAPGNSELGPIDEERRKFLEDALKSLTVNIAEVL 449
           PN PR   +LQ +L++ ++      E AP   +L   D ER +FL +AL ++TV+ A  L
Sbjct: 4   PNVPRGALSLQNVLKYTVQHHDPNPEAAP---KLETPDPERAQFLANALNAMTVDAAAAL 60

Query: 450 LNAIKILTNTERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTAXDFYKMGGFA 608
             A+ IL N+E        E   +D   + D +  +IDDID A    K+GG A
Sbjct: 61  KAALVIL-NSE--------ESSTDDQIESLDVIRSHIDDIDNAITLVKLGGTA 104


>AE014298-1623|AAF48046.1|  837|Drosophila melanogaster CG1745-PB,
           isoform B protein.
          Length = 837

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 360 NSELGPIDEERRKFLEDALKSLTVNIAEVLLNAIKIL---TNTERIRSIQ 500
           NSE    D      L++  K+L  N AE+  NA+K L   TN +R+  ++
Sbjct: 597 NSEEKSEDAREEVLLDEDEKNLEENAAEISDNAVKSLEKPTNEDRVEKVE 646


>AE014296-2181|AAF49888.1|  255|Drosophila melanogaster CG10973-PA,
           isoform A protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +3

Query: 423 LTVNIAEVLLNAIKILTNTERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTAXDFYKMGG 602
           +TV+ A  L  A+ IL N+E        E   +D   + D +  +IDDID A    K+GG
Sbjct: 1   MTVDAAAALKAALVIL-NSE--------ESSTDDQIESLDVIRSHIDDIDNAITLVKLGG 51

Query: 603 FA 608
            A
Sbjct: 52  TA 53


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,194,820
Number of Sequences: 53049
Number of extensions: 462354
Number of successful extensions: 1574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)