Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c12
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 478 YNMIWHIDNP 449
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 514 IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYA 648
           IV+G   + T +  +S + NS     YI  + +W L   +  F A
Sbjct: 264 IVLGTNTILTFMTLASKVENSLPKVSYIKASEIWFLGCTIFLFAA 308


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 478 YNMIWHIDNP 449
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 166 YLQYWFLLSFLMSVALN 216
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 166 YLQYWFLLSFLMSVALN 216
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 166 YLQYWFLLSFLMSVALN 216
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,934
Number of Sequences: 438
Number of extensions: 4648
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)