Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c09
         (110 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   5.3  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    23   7.0  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    22   9.3  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    22   9.3  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 29   IIRHIYRFFYYKTVTKTVKYL 91
            I+ +   F +YK + ++VKYL
Sbjct: 1085 ILNYASNFGHYKAIVQSVKYL 1105


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 17  GGV*IIRHIYRFFYYKTVTKTVKYL 91
           GG+     I  FFYY   T T ++L
Sbjct: 254 GGITFFLTIGLFFYYPDNTSTARFL 278


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 53  FYYKTVTKTVKYLFIC 100
           FYY  ++K + YL IC
Sbjct: 111 FYYIELSKILLYLLIC 126


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 30  IHTPPPSGVL 1
           IH PPPSG L
Sbjct: 171 IHVPPPSGKL 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,415
Number of Sequences: 5004
Number of extensions: 5500
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 18
effective length of database: 2,272,406
effective search space used: 40903308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)