Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c09
         (110 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   1.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   2.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    19   4.2  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    19   4.2  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    19   7.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          18   9.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    18   9.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    18   9.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 58  IKKPINMPNYSYTPTIGR 5
           +++P   PNYS   TIG+
Sbjct: 509 VRQPGKAPNYSVNWTIGQ 526


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
          protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 44 KYAELFIHPHHRAY 3
          +Y++L +HPH RA+
Sbjct: 37 EYSDL-VHPHWRAF 49


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 58  LQNCYENSKILIYL 99
           L+NC E  K+L+ L
Sbjct: 64  LRNCLEKLKVLVPL 77


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
          protein.
          Length = 87

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 44 YRFFYY 61
          YRFFYY
Sbjct: 82 YRFFYY 87


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 74  KTVKYLFICKK 106
           KT +YL +C++
Sbjct: 28  KTTRYLSVCER 38


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 4/7 (57%), Positives = 7/7 (100%)
 Frame = -3

Query: 42  ICRIIHT 22
           +CR++HT
Sbjct: 84  VCRVLHT 90


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 105 FLQINKYFT 79
           FL +NK+FT
Sbjct: 204 FLYLNKHFT 212


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 105 FLQINKYFT 79
           FL +NK+FT
Sbjct: 204 FLYLNKHFT 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,287
Number of Sequences: 438
Number of extensions: 332
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)