Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c07
         (672 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85134-1|CAA59446.1|  538|Homo sapiens RB protein binding protei...    33   1.2  
BC075060-1|AAH75060.1|  538|Homo sapiens retinoblastoma binding ...    33   1.2  
BC075059-1|AAH75059.1|  538|Homo sapiens retinoblastoma binding ...    33   1.2  
BC053856-1|AAH53856.1|  538|Homo sapiens retinoblastoma binding ...    33   1.2  
BC037284-1|AAH37284.1|  500|Homo sapiens RBBP5 protein protein.        33   1.2  
AL583832-2|CAI15287.1|  500|Homo sapiens retinoblastoma binding ...    33   1.2  
AL583832-1|CAI15286.1|  538|Homo sapiens retinoblastoma binding ...    33   1.2  
BC033492-1|AAH33492.2|  753|Homo sapiens SRY (sex determining re...    31   2.8  
AB022083-1|BAA37146.1|  753|Homo sapiens SOX30 protein protein.        31   2.8  

>X85134-1|CAA59446.1|  538|Homo sapiens RB protein binding protein
           protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 50  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 157
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC075060-1|AAH75060.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 50  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 157
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC075059-1|AAH75059.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 50  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 157
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC053856-1|AAH53856.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 50  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 157
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC037284-1|AAH37284.1|  500|Homo sapiens RBBP5 protein protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 50  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 157
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>AL583832-2|CAI15287.1|  500|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 50  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 157
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>AL583832-1|CAI15286.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 50  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 157
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC033492-1|AAH33492.2|  753|Homo sapiens SRY (sex determining
           region Y)-box 30 protein.
          Length = 753

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 247 APADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFLKEWFLL-PHY 387
           AP      I H     ++ P LGH   L   PP +SF   +FL  PHY
Sbjct: 578 APIPQASPIPH--PHVYQPPPLGHPATLFGTPPRFSFHHPYFLPGPHY 623


>AB022083-1|BAA37146.1|  753|Homo sapiens SOX30 protein protein.
          Length = 753

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 247 APADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFLKEWFLL-PHY 387
           AP      I H     ++ P LGH   L   PP +SF   +FL  PHY
Sbjct: 578 APIPQASPIPH--PHVYQPPPLGHPATLFGTPPRFSFHHPYFLPGPHY 623


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,300,664
Number of Sequences: 237096
Number of extensions: 2301671
Number of successful extensions: 12442
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12438
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)