Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c02
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   352   1e-97
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    34   0.094
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.5  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.5  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   6.2  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  352 bits (866), Expect = 1e-97
 Identities = 164/244 (67%), Positives = 193/244 (79%)
 Frame = +1

Query: 22  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 201
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 202 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 381
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 382 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 561
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 562 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGK 741
           +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G 
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGA 241

Query: 742 GIRL 753
           GIRL
Sbjct: 242 GIRL 245


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = +3

Query: 585 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGH 746
           A  HH    E      H  H G HGTH  H          GH G  H A A  GH
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH 518



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +3

Query: 594 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGH 746
           HH    E      H  H G HGTH  H          GH G  H A A  GH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH 576



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +3

Query: 594 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 752
           HHR   E        AH G HGTH  H  E   H+   H G H +     H P
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSP 452



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
 Frame = +3

Query: 564 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 734
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE G H   A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH-HGA 701

Query: 735 RQGH 746
             GH
Sbjct: 702 HHGH 705



 Score = 31.9 bits (69), Expect = 0.50
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
 Frame = +3

Query: 450 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 626
           HH  +   +  +  H P  H ++ ++G H     E  + H     G  G H         
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554

Query: 627 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 722
               AH G HG H         H   G  GVH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH 586



 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +3

Query: 633 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGH 746
           H AH   HG H RH  E    H+   H G H      GH
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGH 428



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
 Frame = +3

Query: 450 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*V-RELVYDHGRP*LGACGHH--RVPRET 617
           HH  +   +  +  H P  H ++  +G H V       + HG       GHH        
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614

Query: 618 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGH 746
                + AH G HG H  H      H   G  H G H      GH
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGH 657



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +3

Query: 591 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 722
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
 Frame = +3

Query: 450 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACG-HHRVPRETSR 623
           HH  +   +  +  H P  H ++ ++G H          H     G  G HH  P     
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518

Query: 624 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 752
              H  H   HG H  H      H   G  G H       H P
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSP 558



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = +3

Query: 594 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 752
           HH  P           H G HG H  H          GH G H       H P
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSP 683


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 334 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 465
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 552 LVYDHGRP*LGACGHHRVPRETSRLLRH 635
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 552 LVYDHGRP*LGACGHHRVPRETSRLLRH 635
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 745 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 656
           C C+ A  C P CP   + + CS T  R C+P
Sbjct: 54  CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 491  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 327
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,354,425
Number of Sequences: 27780
Number of extensions: 451861
Number of successful extensions: 1399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)