Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12b15
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    26   4.1  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   7.2  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    25   7.2  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   9.5  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   9.5  

>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 448 FRQHDETSSQPKLAFRRQKLEIQCAV 371
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 7   FASYTLNRTDVMELYNIKYAIDPTNKIVXEQ 99
           F   T +  D M  YN K + DPT+ ++ ++
Sbjct: 80  FLEATASEKDAMSYYNSKLSEDPTHTVIYKR 110


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 49  YNIKYAIDPTNKIVXEQVDNVDAFVHILEPG 141
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 49  YNIKYAIDPTNKIVXEQVDNVDAFVHILEPG 141
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 111 HIVDLLXYNFIRWIDCIFNIIQFHNVRSIQRIACKKI 1
           H  +     F++ ++ + + +Q+H + S+Q   CKKI
Sbjct: 48  HFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKKI 84


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 55   IKYAIDPTNKIVXEQVDNVDAFVHILEPGQEVFDETLXRYHQFP 186
            I Y  DP + ++ E  D V+AF  I  P +EV +E L  Y Q P
Sbjct: 1155 IHYDPDPQDTVIEEDKDFVEAFFAI--PDEEV-EENL--YKQSP 1193


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +1

Query: 28   RTDVMELYNIKYAIDPTNKIVXEQVDNVDAFVHILEPGQEVFDETLXRYHQFPGVVSSII 207
            +TD+++   I       N +V   + N ++F++ ++   E++        + P  + ++ 
Sbjct: 782  QTDIIDKVLIDMCSSIQNSVV---IINEESFMNNIDITVELYHFFSIILQKHPSFLETMY 838

Query: 208  --FTQLVLNTIISVLSEDGXLL 267
              FTQL+LN  I++L +   LL
Sbjct: 839  PDFTQLILNRAINLLGKPERLL 860


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,718
Number of Sequences: 5004
Number of extensions: 54201
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)