Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12b15
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0089 - 27619053-27620138 30 1.4
12_02_0235 + 16079042-16079410 29 2.4
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 29 2.4
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538... 29 4.3
01_06_0078 + 26223797-26223803,26224000-26224278,26224391-262246... 29 4.3
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 28 5.6
05_04_0045 - 17477470-17477570,17477753-17477774,17477942-174780... 28 5.6
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 28 5.6
02_01_0515 - 3721285-3721440,3721528-3721660,3721758-3721834,372... 28 5.6
12_02_0050 + 12892198-12892252,12892359-12892499,12893081-128932... 27 9.9
01_01_0601 - 4476261-4476728 27 9.9
>05_07_0089 - 27619053-27620138
Length = 361
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 405 KASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERRPC 530
+A F C S+C ++ T N+ V+ +G KG PC
Sbjct: 24 RALFSCGIFSTCTHPALSPTATPNNNVVAGMGGAKGGSGTPC 65
>12_02_0235 + 16079042-16079410
Length = 122
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 399 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERR 524
+RKA G D + MAA +G S V +G H+ AERR
Sbjct: 40 QRKAGTGGDGSE---KTMMAARAEGGSNWVEVIGCHEKAERR 78
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 478 EFPSPVAAIRFRQHDETSSQPKLAFRRQKLEIQCAVFALFH 356
E PS A RF+QH S P FR+ +EI+ ++ H
Sbjct: 301 ELPSTFKAFRFQQH-RWSCGPANLFRKMLMEIKVTIWKKIH 340
>08_01_0612 +
5378190-5378251,5378926-5379244,5379381-5379671,
5380520-5380768,5380843-5380967,5381487-5381585,
5381668-5382352
Length = 609
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 484 ASRLSGHIKVPNGVRVEKLRPNMSVYGTVQLPYDKI 591
AS + G K ++ + L+PN+ VYGT+ Y K+
Sbjct: 400 ASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKL 435
>01_06_0078 +
26223797-26223803,26224000-26224278,26224391-26224609,
26226846-26226917,26228073-26228221,26228859-26229135,
26230922-26231187
Length = 422
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 385 SPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMSVYG 564
SP F E+ V V T H E W + G+ L+GH N + PN +++G
Sbjct: 131 SPDFYRERGVHVRDTVHLDMEMNWFRDLLGLLCPDDLAGHNLFEN--EENFINPNRTIHG 188
Query: 565 T 567
T
Sbjct: 189 T 189
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 55 IKYAIDPTNKIVXEQVDNVDAFVHILEPG 141
+ +I+ NKI D VD +H+LE G
Sbjct: 621 LNLSINDNNKIAIANADAVDPLIHVLETG 649
>05_04_0045 -
17477470-17477570,17477753-17477774,17477942-17478017,
17478288-17478397,17478674-17478743,17478847-17479178
Length = 236
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 405 KASFG-CDDVSSCWRKRMAATGDGNSRSVSAVG 500
KAS+ DD S W R+AA + +S S SA G
Sbjct: 66 KASWSVADDEESRWLDRLAADAESSSSSASAAG 98
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -3
Query: 371 FCFVSLFTIAAGKLPNTKRLLHTWKXKQVFSSFNGSKXPSSLKTLIIVFNTSCVKI 204
FC T + K P+ +HTWK K FS K S LK L V ++S + +
Sbjct: 1072 FCSNGSITNSQSKQPDEIYTVHTWKLKW-FSEETVVKFISLLKALYSVSSSSSLPV 1126
>02_01_0515 -
3721285-3721440,3721528-3721660,3721758-3721834,
3722694-3722770,3723441-3723500,3724155-3724527
Length = 291
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 148 LLDPVLGYAQMRPHCRLALLQFYSLDRLHI*YYTIP*RPFDSTYSL 11
LLDP L AQM R +++Q Y+L + H + + +S +SL
Sbjct: 231 LLDPPLSVAQMANRARWSVMQSYNLLKWHKKAHRAAVKALESGHSL 276
>12_02_0050 +
12892198-12892252,12892359-12892499,12893081-12893237,
12894056-12894128,12894506-12894514
Length = 144
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 563 GLCNCRTIKLNGMRSSKKNKTPNALESCVLF 655
G +CRT+K +G S KK +T + E C +
Sbjct: 17 GAISCRTVKGSGSSSRKKMETADDHEYCYYY 47
>01_01_0601 - 4476261-4476728
Length = 155
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 450 RMAATGDGNSRSVSAVGTHKGAERR 524
R AA G+G S G H+GA RR
Sbjct: 66 REAARGNGGSEGEGGGGAHRGARRR 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,428,340
Number of Sequences: 37544
Number of extensions: 347755
Number of successful extensions: 991
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -