Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12b13
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 58 2e-09
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.086
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 32 0.086
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.20
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 29 0.80
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 29 0.80
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 27 1.8
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 2.4
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 4.3
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 25 7.5
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 25 9.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.9
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = -2
Query: 667 IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFCPL 488
+P P+VP+ P P +P P +P P +P +P P PV+P +P P+ P P+ P P
Sbjct: 619 VPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPS 678
Query: 487 GPCAPSAP 464
P P+ P
Sbjct: 679 VPQPPAVP 686
Score = 55.2 bits (127), Expect = 8e-09
Identities = 27/68 (39%), Positives = 36/68 (52%)
Frame = -2
Query: 667 IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFCPL 488
+P +PSVP P P P +P P P +P++P P P P +P+ P P P P P+
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPV 657
Query: 487 GPCAPSAP 464
P APS P
Sbjct: 658 VPEAPSVP 665
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = -2
Query: 667 IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFCPL 488
+P P+VP+ P +P P +P P +P +P P APV+P +P P+ P P+ P P
Sbjct: 559 VPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPS 618
Query: 487 GPCAPSAP 464
P P+ P
Sbjct: 619 VPQRPAVP 626
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/68 (38%), Positives = 35/68 (51%)
Frame = -2
Query: 667 IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFCPL 488
+P P P+ P +P +P P +P P P +P P APV P P P+ P P+ P P
Sbjct: 574 VPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPS 633
Query: 487 GPCAPSAP 464
P P+AP
Sbjct: 634 VPQPPAAP 641
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/68 (38%), Positives = 35/68 (51%)
Frame = -2
Query: 667 IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFCPL 488
+P P P+ P +P +P P P P P +P P APV+P P P+ P P+ P P
Sbjct: 604 VPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPS 663
Query: 487 GPCAPSAP 464
P P+AP
Sbjct: 664 VPQPPAAP 671
Score = 52.8 bits (121), Expect = 4e-08
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = -2
Query: 664 PGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFCPLG 485
P PS P +P+ P +P P P P +P++P P P++P+ P P P P P+
Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVV 598
Query: 484 PCAPSAP 464
P APS P
Sbjct: 599 PEAPSVP 605
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = -2
Query: 667 IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFCPL 488
+P +PSVP P+ P +P +P P P +P++P P P P +P+ P P P P P+
Sbjct: 628 VPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPV 687
Query: 487 GP 482
P
Sbjct: 688 VP 689
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 583 PILPANPFAPVLPLSPLGPRGPCGPI*PFCPLGPCAPSAP 464
P +P P APV+P +P + P P+ P P P P+AP
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAP 551
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.086
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Frame = -2
Query: 652 SVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSP------LGPRGPCGPI*PFCP 491
++PL+ S P PG P + +P P + APV P +P P P P
Sbjct: 1425 TMPLKASQPTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQ 1484
Query: 490 LGPCAPSAP 464
L P P+ P
Sbjct: 1485 LPPAVPNVP 1493
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -2
Query: 667 IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFCPL 488
+P +P + P P PG+ + P PA P APV L P P P + P
Sbjct: 1447 VPPAPMHAVAPVQPKAPGMVTNAPAP--SSAPAPP-APVSQLPPAVPNVPVPSMIPSVAQ 1503
Query: 487 GPCAPSAPS 461
P + AP+
Sbjct: 1504 QPPSSVAPA 1512
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 31.9 bits (69), Expect = 0.086
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 655 PSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGP 518
PS P+QP G+P P P P++P PV + P P P
Sbjct: 404 PSSPVQPVQNGVPAPPMQPVQSTQYYQPSSPVQPVQNVKPAQPAQP 449
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 30.7 bits (66), Expect = 0.20
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -2
Query: 655 PSVPLQPSLPGIPGLP-WSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFCPLGPC 479
P VPL P +PG PG+P + P P++P P +P P P P P P
Sbjct: 501 PGVPLPP-IPGAPGMPNLNMSQP--PMVPPGMALPPGMPAPF-PGYPAVPAMPGIPGATA 556
Query: 478 APSAP 464
P AP
Sbjct: 557 PPGAP 561
Score = 30.3 bits (65), Expect = 0.26
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 664 PGSPSVPLQPSLPGIPGLPWSPG 596
PG P+VP P +PG P +PG
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPG 562
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 28.7 bits (61), Expect = 0.80
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +3
Query: 126 DDRYADWNNIYSRDLPPTNWPREVAPDTERPYAVNQYGLYN 248
+DRYADWN S D P PR E P V G YN
Sbjct: 208 EDRYADWNFTNSWD-PDCELPRFWGESGE-PVVVEWTGCYN 246
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 28.7 bits (61), Expect = 0.80
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 105 IIGVSSQDDRYADWNNIYSRDLPPTNWPREVAP 203
I+G+ + DR DWN+ Y+R + W AP
Sbjct: 254 IVGIEADPDR-PDWNDYYARRVQFCQWTIAAAP 285
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +3
Query: 135 YADWNNIYSRDLPPTNWPREVAP--DTERPYAVNQYGLYNRNDIP 263
+ DWN + PP W E+ P DT Y V+ Y+ P
Sbjct: 245 FPDWNKFIFHEYPPKPW-SEILPSVDTSIQYIVSHLVTYSNRASP 288
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 667 IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLP 545
+P + P SLP P P P IP+ P++ F P+ P
Sbjct: 283 LPNAYPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYP 323
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 664 PGSPSVPLQPSLPGIPGLPWSPGDP*IPILPA-NPFAPVLPLSPLGPRGP 518
PG P++P+ G G P P P ++ + +P A +P +P+ P P
Sbjct: 269 PGMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAATIPGAPVMPNIP 318
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = +3
Query: 192 EVAPDTERPYAVNQYGLYNRNDIPPQSRPEPELGQNFAVYDPDTRQRTSTAINRNCTAPG 371
EV D +R +QYG+ N PP E G F + P + + N PG
Sbjct: 53 EVLSDPQRRKLYDQYGITEGNAAPPPPGAEGGPGAGFGGF-PGAGPGGARTFHFNMGGPG 111
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 390 FAEKGNRGFPGSPGPQGPRGLPG 458
+ E+G G PG PG G PG
Sbjct: 71 YGEEGLNGQPGGPGGGPGEGFPG 93
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 658 SPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPL 542
+PS+P+ PS+P +PG+ P + A P +PL
Sbjct: 430 TPSLPV-PSIPAVPGMEAMAMPPGVTSSIAVPTTSSMPL 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,771
Number of Sequences: 5004
Number of extensions: 61405
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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