Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12b07
         (297 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    19   8.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          19   8.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   8.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    19   8.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   8.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   8.5  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +2

Query: 5   HTMERYHPY 31
           H   RYHPY
Sbjct: 171 HHYARYHPY 179


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 9   QWRDIIRINERRGT 50
           +W+DI+    +RGT
Sbjct: 446 RWKDILEKPRQRGT 459


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 102 KYLTQQIMQTSK*LTQQMRPLAQNLKQGE 188
           +Y   Q  +T +  TQQ   + QN+  GE
Sbjct: 287 QYQMNQEYRTDRKHTQQHYQMNQNMYPGE 315


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 263 ITVKVLQNCRRQYNTAAA 210
           +TVK LQN +RQ    +A
Sbjct: 83  MTVKHLQNLQRQQAAMSA 100


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 102 KYLTQQIMQTSK*LTQQMRPLAQNLKQGE 188
           +Y   Q  +T +  TQQ   + QN+  GE
Sbjct: 235 QYQMNQEYRTDRKHTQQHYQMNQNMYPGE 263


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 102 KYLTQQIMQTSK*LTQQMRPLAQNLKQGE 188
           +Y   Q  +T +  TQQ   + QN+  GE
Sbjct: 418 QYQMNQEYRTDRKHTQQHYQMNQNMYPGE 446


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,825
Number of Sequences: 336
Number of extensions: 1393
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5322850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)