Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12b07
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   1.0  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   1.8  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   2.4  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   2.4  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    24   4.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   4.2  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    24   5.5  
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   5.5  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    24   5.5  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.3  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    23   7.3  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    23   7.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   7.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    23   9.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    23   9.6  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    23   9.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   9.6  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 47  NASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 178
           + S +  N++N+ +  +   P+ TN++     D + + S  KSK
Sbjct: 53  STSSYSGNHHNINIQHHPNRPFRTNSSSFSPNDYSISESPSKSK 96


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 68  NYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRL 193
           NY NVK+ +          A + +  TTNA  +P  K  + L
Sbjct: 67  NYTNVKITATQNNVDALTGAPIRIVTTTNARIQPDEKTLQDL 108


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 261 HSKGFAKLPSSIQHGCGAMLVKSNLLLALD-FGRE-GAFVVSVISTSALFV 115
           H+KGF  LPS + + C   L +   +  ++  G E  A  VSV+     FV
Sbjct: 219 HTKGFLNLPSGVWYLCFNTLAQYFCVRGVNALGAETSALTVSVVLNVRKFV 269


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 23  HPYQRAPWNASIFKKNYNNVK-VASYIEVPYTTNNA-DVEMTDTT-NAPSRPKSKARRRL 193
           H Y+        F  + +N++ + S I VP   ++  D+E  D   + P RP S A +  
Sbjct: 223 HRYKSQHHRLRQFYADCSNLRYLTSLISVPRLPHDPPDLEGDDNIPDLPKRPASIAPQPT 282

Query: 194 DFTNMAPQP 220
             + +APQP
Sbjct: 283 GASTIAPQP 291


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 151 CCVSHFDVCI 122
           CC+ H+D+CI
Sbjct: 155 CCLKHYDLCI 164


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 296  FFFKANLFNKYITVKVLQNCRRQYNTAAAPCW*NLIFSLL 177
            FF    L N ++ V   Q  R  +NT+  P W  +I  L+
Sbjct: 2147 FFISQILINYWLAVPYGQAWRFFWNTSNTPLWSIIILLLI 2186


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 201 PTWRRSRVVLTTAILQNLYC 260
           P+W+ S  VL   IL  L+C
Sbjct: 909 PSWQLSGAVLVVDILATLFC 928


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 83  KVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDF 199
           K+A  ++   +++N      +  +  S P SKAR+  DF
Sbjct: 4   KIADLLQELQSSSNVTSNQLENVDKSSIPLSKARKPSDF 42


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 198 LPTWRRSRVVLTTAILQNLYC 260
           +P+W+ S  VL   IL  ++C
Sbjct: 820 IPSWQLSGAVLAVDILATMFC 840


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 122 NADVEMTDTTNAPSRPKSKARRRLDFTN 205
           +AD  M D + +  R KSK ++ + FT+
Sbjct: 213 DADHAMIDESRSTQRRKSKPKKHVAFTD 240


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 147 QQMRPLAQNLKQGED*ILPTWRRSRVVLTTAILQ--NLYCDIFIK*VC 284
           Q +RPLAQ+  +  D + P   R   +L++ + Q  + + + F+  VC
Sbjct: 211 QYLRPLAQDSTEYFDALTPDSLRPLYILSSYLFQFGDQFSEAFLLDVC 258


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 224  NTAAAPCW*NLIFS 183
            N  + PCW N++FS
Sbjct: 1012 NVESQPCWYNILFS 1025


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 267  IYHSKGFAKLPSSIQHGCGAM 205
            +YH + F   P  I H C A+
Sbjct: 2930 LYHDELFQANPQEIHHACNAV 2950


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 3   IIQWRDIIRINERRGTHQYLKKIIIMLKSL 92
           I QWRD I    RRG +  L   I  L  L
Sbjct: 153 IAQWRDTIEEIHRRGFYLVLDLTISTLGDL 182


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 20  YHPYQRAPWNASIFKKNYN 76
           Y P+ RA  NASI  KN++
Sbjct: 502 YRPFLRANDNASINNKNHH 520


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 125 ADVEMTDTTNAPSRPKSKARRRLDFTN 205
           ++++ T T++A S+P ++  R   FTN
Sbjct: 438 SNMDETGTSSAGSKPFNRKSRNRSFTN 464


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 26   PYQRAPWNASIFKKNYNNVKVASYIEVPYTTNN 124
            P   A W+ SI+     N     +++VPY T N
Sbjct: 1152 PLSLATWSKSIYINREGN-----FLDVPYNTRN 1179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,070
Number of Sequences: 5004
Number of extensions: 22150
Number of successful extensions: 57
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)