Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12b07
(297 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0717 + 35702592-35703152,35703789-35704121 28 1.1
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 27 2.6
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129... 27 3.5
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 26 4.6
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 26 4.6
02_04_0094 + 19664434-19665078 26 4.6
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 26 6.0
08_02_0741 - 20618319-20618523,20618627-20618684,20618807-206191... 26 6.0
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 26 6.0
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 26 6.0
10_02_0174 - 6202334-6204922 25 8.0
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408... 25 8.0
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 25 8.0
>03_06_0717 + 35702592-35703152,35703789-35704121
Length = 297
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 187 SPCFRFWARGRICCVSHFDVCIICCVRYFNV 95
S C R W RGR+ SHF C+R +V
Sbjct: 114 SECKRGWLRGRVTHSSHFWASTSACLRRSHV 144
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 DHTMERYHPYQRAPWNASIF--KKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKS 175
D TM+ Y Q + F +K+ N A+ ++ T+N V +++ + ++PK
Sbjct: 589 DDTMDAYKTEQTSEMEGKKFMARKSCNPAFAAAQLKFEELTSNLTVSRSNSLDGANKPKV 648
Query: 176 KARRRLDFTNMAPQ 217
R D N++P+
Sbjct: 649 HTPRSQD--NVSPK 660
>05_04_0077 -
17712043-17712246,17712487-17712522,17712746-17712900,
17713431-17713591,17713950-17714110,17714188-17715657,
17715704-17715998,17716461-17717737,17717826-17718137,
17718223-17718356,17718449-17718521,17719994-17720059,
17720748-17720936
Length = 1510
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 128 DVEMTDTTNAPSRPKSKARRRLDFTNMAPQPCCIDDG 238
DV+ ++ N PK KA+ ++ A +DDG
Sbjct: 418 DVKAANSANDDKHPKGKAKLKVTLVRNAKMESSLDDG 454
>06_01_0497 +
3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 255 KGFAKLPSSIQHGCGAMLVK 196
+GF K+ SSIQ GAM VK
Sbjct: 6 EGFGKMLSSIQEAIGAMSVK 25
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 143 DTTNAPSRPKSKARRRLDFTNMAPQP 220
++TN P++P SK + R + + AP+P
Sbjct: 131 NSTNKPNKPSSKMQPRPESHSKAPKP 156
>02_04_0094 + 19664434-19665078
Length = 214
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 101 EVPYTTNNADVEMTDTTNAPSRPKSKARRRLDFTNMAPQPCCIDDGNFAK 250
++ ++ A +E D+T S PKS A A P C G AK
Sbjct: 66 DIDWSEVGAVLEREDSTKGASNPKSAAACSCAGAPAARMPTCAGGGGTAK 115
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 57 YLKKIIIMLKSLHTLKYLTQQIMQTSK*LTQQMRPLAQ 170
+LKKI L+SL LKYL + + +K L Q+++ L Q
Sbjct: 689 HLKKICEQLESLRLLKYLGLKGTRITK-LPQEIQKLKQ 725
>08_02_0741 -
20618319-20618523,20618627-20618684,20618807-20619164,
20619253-20619337,20619452-20619726,20619807-20620039,
20620371-20620398
Length = 413
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 107 PYTTNNADVEMTDTTNAPSRP-KSKARRRLDFTNMAPQPCCI 229
PY ++ + +E +DT +PS P KS TN C+
Sbjct: 352 PYPSSKSPLESSDTIGSPSTPSKSSCTDITPSTNNCEDSLCL 393
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 23 HPYQRAPWNASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPK 172
H Y AP+ ++ + N + ++Y PYT D +D+ N S K
Sbjct: 277 HGYSSAPYTSTDYPTNEVHKPPSNYSSPPYT--RTDYPSSDSYNPQSNDK 324
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +2
Query: 29 YQRAPWNASIFKKNYNNVKVASYIEVPYT-TNNADVEMTDTTNAPSRPKSKARRRLDFTN 205
YQ + WN F+ NY SY P + TN ++ TN+ S + + + +
Sbjct: 186 YQNSTWNGGSFENNY----AQSYQNYPSSNTNTVQHSISVPTNSFSYQQQYNQWPYYYNH 241
Query: 206 MAPQPCCIDDGN 241
P P GN
Sbjct: 242 TVPNPAGDPVGN 253
>10_02_0174 - 6202334-6204922
Length = 862
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 225 QHGCGAMLVKSNLLLAL 175
QHGCG ML K N AL
Sbjct: 444 QHGCGMMLNKENKTSAL 460
>08_01_0463 -
4075037-4075316,4075997-4076151,4076818-4078861,
4080757-4081589
Length = 1103
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 21 IIRINERRGTHQYLKKIIIMLKSLHTLKYLTQQIMQTSK 137
++ + + Y K I+ L +LH L+YL Q ++TS+
Sbjct: 595 VLALENHFSRNYYCKHILQHLGNLHHLRYLGLQNVRTSE 633
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 98 IEVPYTTNNADVEMTDTTNAPSRPKSKARRR 190
+ P TTN D + T+ +RP +K R R
Sbjct: 544 VHTPETTNEIDPKSVITSEKENRPPTKQRLR 574
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,482,795
Number of Sequences: 37544
Number of extensions: 130216
Number of successful extensions: 333
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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