Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12b07
         (297 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   1.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   3.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   9.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   9.8  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 247 CKIAVVNTTRLRRHVGKI*SSP 182
           C   + + TRLRRH+  + + P
Sbjct: 8   CNKILTSLTRLRRHIQNVHTRP 29


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 44  WNASIFKKNYNNVKVASYIE 103
           W A   K    N KV SYI+
Sbjct: 371 WGAECGKYPNGNTKVGSYID 390


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 206 CW*NLIFSLL*IL 168
           CW  +++SLL I+
Sbjct: 92  CWITMVYSLLGII 104


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 21  IIRINERRGTHQYLKKIIIMLKSLHTLKY 107
           I+RIN  R  +  LKK I +  S   +++
Sbjct: 112 ILRINRNRCQYCRLKKCIAVGMSRDAVRF 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,275
Number of Sequences: 438
Number of extensions: 1576
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)