Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a24
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0218 + 14983132-14984658,14984762-14984869,14984964-149851...    29   5.2  
01_06_0739 - 31601656-31602233,31602777-31602906                       29   5.2  
07_03_0354 - 17109041-17109289,17109423-17109555,17110560-171107...    28   6.9  
02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608     28   6.9  

>11_04_0218 +
           14983132-14984658,14984762-14984869,14984964-14985125,
           14985270-14985275
          Length = 600

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +2

Query: 191 EVQDVQAEGKYAIDSPGSPTAPEIPPEEYTLNENEERAIIEPRSLEDPRVRDLIQVLIDW 370
           +  + +     A+D+P  P A EIP       E ++      + L D + + ++  + DW
Sbjct: 277 DAAEAECRRALAVDNPDDPAAHEIPLGSAIGEEYDDMVSSLRKQLCDLQKKLVLLAVHDW 336

Query: 371 INDELASQRIIVQDIIEDL 427
            + E   Q  I+   I++L
Sbjct: 337 ASMESEKQSQILSVSIDEL 355


>01_06_0739 - 31601656-31602233,31602777-31602906
          Length = 235

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 230 DSPGSPTAPEIPPEEYTLNENEERAIIEPRSLEDPRVRDLIQVL 361
           D+ G PT  ++  +E TL  N + AI E       ++RD +++L
Sbjct: 64  DADGYPTTEDLSIDEETLQRNLQTAIQEEDYSRAAKIRDDLRIL 107


>07_03_0354 -
           17109041-17109289,17109423-17109555,17110560-17110738,
           17111568-17111689,17111813-17111960
          Length = 276

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 667 SSHTSPRKCFCERCYRQEKHT-DPTISP 747
           SS ++PR   CERC R  K    P++SP
Sbjct: 19  SSSSTPRASACERCVRNGKAAYSPSLSP 46


>02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608
          Length = 276

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 230 DSPGSPTAPEIPPEEYTLNENEERAIIEPRSLEDPRVRDLIQVL 361
           ++ GSP+   I  +E TL  + + AI E    +  ++RD ++VL
Sbjct: 59  EAEGSPSTESITRDEETLQRDLQTAIQEENYAQAAKLRDELRVL 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,732,224
Number of Sequences: 37544
Number of extensions: 342624
Number of successful extensions: 1065
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)