Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a24
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arr...   133   1e-31
U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U40800-8|ABB51192.1|  349|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U40800-7|AAA81493.2|  343|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    30   2.0  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL031630-19|CAA20999.1|  123|Caenorhabditis elegans Hypothetical...    28   8.2  

>AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arrest
           at two-fold protein6 protein.
          Length = 375

 Score =  133 bits (322), Expect = 1e-31
 Identities = 68/166 (40%), Positives = 99/166 (59%)
 Frame = +2

Query: 191 EVQDVQAEGKYAIDSPGSPTAPEIPPEEYTLNENEERAIIEPRSLEDPRVRDLIQVLIDW 370
           EV +++ EG+ A+D    P    +      L E E R  +   +  D ++  ++ +LI W
Sbjct: 53  EVLELELEGREALDQSLVP----VLARNIWLEEGEIRRYLTKETARDQKLAQVVDLLIYW 108

Query: 371 INDELASQRIIVQDIIEDLYDGQVXXXXXXXXXXXXXDVPEVTQSEEGQRQKLTIVLRAV 550
           +N+ELA QRI+V+ + EDL+DGQ+             +VPEV+QSEEGQRQKL IV++  
Sbjct: 109 LNEELADQRIVVRHLQEDLFDGQIIQKLLEKLEQIRIEVPEVSQSEEGQRQKLQIVVQTA 168

Query: 551 NRVLYGTSKPVPKWSVDSIHSKSIVSILHLLVALARHFRAPIRLPE 688
           NR+L G  +   KWS D IH K   +I+ LLV LA H+RAP+R P+
Sbjct: 169 NRIL-GQPREQEKWSADLIHQKDFTAIIQLLVLLALHYRAPVRFPD 213


>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 83  SSPRPKSPRTPVLPKKEEK 139
           SSP PK P+T V P KEEK
Sbjct: 297 SSPPPKLPKTVVQPSKEEK 315


>U40800-8|ABB51192.1|  349|Caenorhabditis elegans Hypothetical
           protein D2096.7b protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 353 QVLIDWINDELASQRIIVQDIIEDLYD 433
           +V+IDW+N ELAS  +I++ +  + +D
Sbjct: 197 EVVIDWLNSELASSSLILRILKSNCHD 223


>U40800-7|AAA81493.2|  343|Caenorhabditis elegans Hypothetical
           protein D2096.7a protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 353 QVLIDWINDELASQRIIVQDIIEDLYD 433
           +V+IDW+N ELAS  +I++ +  + +D
Sbjct: 191 EVVIDWLNSELASSSLILRILKSNCHD 217


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 615 FECIESTLHFGTGFDVPYKTRLTARKTIVNFWRCPSSD*VTSGTSSFVFV 466
           FE +E  +H G    +  K  +TA ++ V   RC   D V     +F FV
Sbjct: 534 FELVEFLIHMGAPLQIRNKHEMTAVESCVIMRRCDILDLVIKNGGTFHFV 583


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/64 (26%), Positives = 24/64 (37%)
 Frame = +2

Query: 77  EMSSPRPKSPRTPVLPKKEEKESFWDXXXXXXXXXXXXEVQDVQAEGKYAIDSPGSPTAP 256
           E+  P     +TPVL +KE + S                V+   +  K A      P A 
Sbjct: 362 EVKKPSAPEKKTPVLKRKEPEPSSTTPSSDPSPKKAAPAVKPRDSSPKKATPLQADPKAQ 421

Query: 257 EIPP 268
           E+PP
Sbjct: 422 EVPP 425


>AL031630-19|CAA20999.1|  123|Caenorhabditis elegans Hypothetical
           protein Y38H6C.22 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 676 TSPRKCFCERCYR 714
           T+P +C CE+CYR
Sbjct: 61  TAPARCVCEKCYR 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,527
Number of Sequences: 27780
Number of extensions: 320622
Number of successful extensions: 1141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)