Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a24
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    30   0.027
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.76 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.4  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   9.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   9.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   9.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 715  DDNNVHRNIFGETYGSSEMTGQSNEQMKNR 626
            D+N  H +IFG T  ++E+  +S E  +NR
Sbjct: 1109 DENRYHEDIFGITLRTAEVHNRSRETARNR 1138


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = +1

Query: 622 CFDSSFARCSGPSFPSSHTS--PRKCFCERCYRQ-EKHTD 732
           C        SG +    H     R+C CE  Y+Q E HT+
Sbjct: 301 CVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTE 340


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 203 VQAEGKYAIDSPGSPTAPEIPPE 271
           V  E  + +     PTAP IPPE
Sbjct: 90  VADENGFQVQGSHIPTAPPIPPE 112


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 565 RYIKTSTKMECGFDTFKKYCFDSSFARCSG 654
           RY+       CG D F +    +S+  C G
Sbjct: 192 RYVPEGNMTACGTDYFNRGLLSASYLVCYG 221


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 565 RYIKTSTKMECGFDTFKKYCFDSSFARCSG 654
           RY+       CG D F +    +S+  C G
Sbjct: 68  RYVPEGNMTACGTDYFNRGLLSASYLVCYG 97


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +1

Query: 565 RYIKTSTKMECGFDTFKKYCFDSSFARCSGPSFPSSHTSPRKCFCERCYRQEKHTDPTIS 744
           R + +  +   G    K++   S+   CSG +       PRK    +C   +K   P +S
Sbjct: 265 RQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLS 324


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 289 LIQSIFFRGNLWCG 248
           L + I + G LWCG
Sbjct: 25  LEERIIYPGTLWCG 38


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 289 LIQSIFFRGNLWCG 248
           L + I + G LWCG
Sbjct: 30  LEERIIYPGTLWCG 43


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 238 WRINSIFPFSLYILNFFNPFFAPYC 164
           W +N+     L   +FF  FF  YC
Sbjct: 407 WSVNAGMWMWLSCSSFFQQFFHCYC 431


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 289 LIQSIFFRGNLWCG 248
           L + I + G LWCG
Sbjct: 30  LEERIIYPGTLWCG 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,409
Number of Sequences: 438
Number of extensions: 3742
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)