Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a23
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   4.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 577  PPQMGMKPYNKCDKFGKGTLSTGKLRPYTPHST 479
            PP  G   YN CD+  +GT+    +R    HST
Sbjct: 1654 PPVPGSN-YNTCDRIKRGTV----IRSIRSHST 1681


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 KEQVDVHVSWNVWN 206
           K+ V V+ SWN WN
Sbjct: 687 KDLVSVNKSWNKWN 700


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 KEQVDVHVSWNVWN 206
           K+ V V+ SWN WN
Sbjct: 687 KDLVSVNKSWNKWN 700


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 KEQVDVHVSWNVWN 206
           K+ V V+ SWN WN
Sbjct: 687 KDLVSVNKSWNKWN 700


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
 Frame = +3

Query: 15  MLYKLLNVLWLVVAVSNAIPGTP----VIDWAERNY-ALVK--INY-EATAYENLIKLKE 170
           M+  L+ ++W+V+ + +   G P    + D    NY  LV+  +N  +A   +  +KL +
Sbjct: 1   MMKSLVGIMWIVLVLISGCSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQ 60

Query: 171 QVDVHVSWNVWNGDIGDIAYVFFDEQQVW 257
            +DV++   +   ++  +   ++D +  W
Sbjct: 61  LIDVNLKNQIMTTNLW-VEQSWYDYKLKW 88


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -2

Query: 515 YGKAAPVHTPLDKVRSDNFILSSAGFVVFQPCVFERRQMTAVGVC 381
           Y  AA    P+     DN +  S+    F+    ER++    G C
Sbjct: 110 YNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKC 154


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -2

Query: 515 YGKAAPVHTPLDKVRSDNFILSSAGFVVFQPCVFERRQMTAVGVC 381
           Y  AA    P+     DN +  S+    F+    ER++    G C
Sbjct: 126 YNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKC 170


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -2

Query: 515 YGKAAPVHTPLDKVRSDNFILSSAGFVVFQPCVFERRQMTAVGVC 381
           Y  AA    P+     DN +  S+    F+    ER++    G C
Sbjct: 183 YNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKC 227


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 580 SPPQMGMKPYNKCDKFGKGTLSTGKLRPYTPHS 482
           SPP    KP +KC     G L      P +P S
Sbjct: 415 SPPPEDWKPLDKCYFCLDGKLPHDDQPPLSPQS 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,505
Number of Sequences: 438
Number of extensions: 4381
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)