Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a18
         (190 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    19   4.6  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    18   8.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 55  DHPMTPYLVPLLSFGKAS 2
           DH   PYL P    G+ +
Sbjct: 162 DHQPVPYLTPADDRGRVA 179


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 18.2 bits (35), Expect = 8.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 86  SIYL*LSWNNRSSNDAIFSTF 24
           SIY+   W N S N   F  F
Sbjct: 85  SIYVGTVWINTSINGTKFIEF 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,656
Number of Sequences: 336
Number of extensions: 233
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 42
effective length of database: 108,473
effective search space used:  2169460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)