Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a13
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BHS0 Cluster: Chromosome undetermined scaffold_108, w...    33   4.8  
UniRef50_UPI0000498948 Cluster: hypothetical protein 181.t00002;...    33   8.4  
UniRef50_Q0JDU2 Cluster: Os04g0376400 protein; n=4; Oryza sativa...    33   8.4  

>UniRef50_A0BHS0 Cluster: Chromosome undetermined scaffold_108,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_108,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 651

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = -2

Query: 273 LNQKLLLFYFT--TVAHLHFDTKLLHKLRTFSGHSIHPP---PFVSLLGRHENKTDRRTQ 109
           +N K L FY    T  + H D   +HK   +S +S++ P   P + LL   + K+    Q
Sbjct: 200 INSKRLYFYLKDGTPINSHLDIPPIHKTLIYSQNSVYKPYENPQLDLL-ESQCKSYNFLQ 258

Query: 108 VKNKQKGNRSSRSRD 64
           +K KQ  N +S+  D
Sbjct: 259 IKKKQYKNSNSQVED 273


>UniRef50_UPI0000498948 Cluster: hypothetical protein 181.t00002;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 181.t00002 - Entamoeba histolytica HM-1:IMSS
          Length = 2089

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 183 GHSIHPPPFVSLLGRHENKTDRRTQV-KNKQKGNRSSRSR 67
           G +++ PP  SL+   ENKT + TQ+ + K+K N S + +
Sbjct: 603 GENVNNPPNQSLINNSENKTQKTTQISETKKKINHSVKKK 642


>UniRef50_Q0JDU2 Cluster: Os04g0376400 protein; n=4; Oryza
           sativa|Rep: Os04g0376400 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 479

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 349 ANAHRSPLHALVLSLYIPLYYNKQSTKPEASTLLL 245
           A+AH  PL AL  S+Y  LYY   +  P   TLLL
Sbjct: 49  ADAHLRPLAALDASMYTHLYYYAVAVHPARRTLLL 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,559,877
Number of Sequences: 1657284
Number of extensions: 12568397
Number of successful extensions: 33049
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33027
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)