Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a13
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   5.7  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    26   5.7  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    26   5.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.6  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   10.0 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   10.0 
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   10.0 

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 37  VLYHKRDATVTRSRTSIPFLFIFHLRPS-VRFVFVAAKQRNKRR 165
           V  + +D +V+    ++PF+F   +RP  VR V  A   +NKR+
Sbjct: 8   VSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAV-AKNKRQ 50


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 37  VLYHKRDATVTRSRTSIPFLFIFHLRPS-VRFVFVAAKQRNKRR 165
           V  + +D +V+    ++PF+F   +RP  VR V  A   +NKR+
Sbjct: 8   VSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAV-AKNKRQ 50


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 303 IYLYTTTNNPLNQKLLLFYFTTVAHLHFDTKLLHKLRTFSGHSIHPPP 160
           +YL  TTN    +KL+   F  + + H    L+ ++  F+G S+   P
Sbjct: 29  VYLCHTTNEQQFKKLMTEMFEYIVYAHIIRGLVLEVGDFAGISLWMGP 76


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 290  LQQTIH*TRSFYSSTSLQLHTCTSTLNF 207
            LQ+T+H TR+F+    L  H  T T +F
Sbjct: 2091 LQETVHSTRAFFE--DLDTHADTLTFDF 2116


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 24  RTDARVIPQAGRNSHAIANFDSLFVYFSLASFGPFCFRGGQAKKQKEAD 170
           +TD  + P+  RN  ++AN+  +     +A+F  F F     K +++ D
Sbjct: 21  KTDQSLFPEIVRNILSVANYSDIRYKKWMANFLWFGFSSKNVKFEQKLD 69


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
 Frame = +1

Query: 7    AADPSRVQTRVLYHKRDATV-----TRSRTSIPFLFIFHLRPSVRFVFVA---AKQRNKR 162
            ++DP+     + YHK  A       T+ +TS  +LF+ +L PS+   F +    K     
Sbjct: 1270 SSDPNLTVDFLAYHKAAADTFEVAKTQKKTSSVYLFVKYLDPSLLDFFCSEFVPKITELS 1329

Query: 163  RRMDRVTGEGTEFVQKF 213
            +  D++    T  V  F
Sbjct: 1330 KEEDKLVAWATSIVNVF 1346


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 379 STQRKLERKHANAHRSPLHALVLSLYIPLYYNKQSTKPEASTLLLHY 239
           +T+ KL++K    HR P + L + L   L  + +  KPE +     Y
Sbjct: 332 TTEIKLKKKKFGKHRLPNNPLEIKLGDELTSSLRELKPEGNLFADRY 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,074
Number of Sequences: 5004
Number of extensions: 55327
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)