Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a13
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       33   0.28 
08_02_1150 + 24709071-24710774                                         29   2.6  
02_03_0368 - 18237099-18237851                                         29   2.6  
03_05_0545 + 25419031-25420758                                         28   7.8  
03_04_0018 - 16484109-16484300,16484575-16484656,16484746-164848...    28   7.8  
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395...    28   7.8  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 349 ANAHRSPLHALVLSLYIPLYYNKQSTKPEASTLLL 245
           A+AH  PL AL  S+Y  LYY   +  P   TLLL
Sbjct: 49  ADAHLRPLAALDASMYTHLYYYAVAVHPARRTLLL 83


>08_02_1150 + 24709071-24710774
          Length = 567

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 427 ALLTKCVAGKRGSIRESTQRKLERKHANAHRSPLHALVLSLY 302
           ALL  C   KR  + E  Q ++   + NA +S  H L+  +Y
Sbjct: 500 ALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIY 541


>02_03_0368 - 18237099-18237851
          Length = 250

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 186 SGHSIHPPPFVSLLGRHENKTDRRTQVKNKQKGNRSSRSRDCCVPLVV 43
           +GH+  PPP  +    HE K  +R Q + K+K  R    R  C  LV+
Sbjct: 18  AGHTPPPPPPPA---DHETKLPKRQQQQRKKKKKRGCCCRLACAALVL 62


>03_05_0545 + 25419031-25420758
          Length = 575

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 98  LFFTCVLRSVLFSWRPSKETKGGGWIE*PEKVRSLCKSLVSKCKCATVVK*KSRSFWFSG 277
           LF + V+  V+     S+  +GG  +E    VR +C  L++ C    ++   + + W S 
Sbjct: 196 LFVSTVVAGVVALAAASRAGRGGVVVELRGFVRDICFLLLALCSLLAILVTGTVTVWVSA 255

Query: 278 LFV 286
            FV
Sbjct: 256 SFV 258


>03_04_0018 -
           16484109-16484300,16484575-16484656,16484746-16484856,
           16484937-16485188,16485274-16485677,16486035-16486952,
           16486990-16487475,16487566-16487763
          Length = 880

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 37  VLYHKRDATVTRSRTSIPFLFIFHLRPSVRFVFVAAKQRNKRRRMDRVTGEGTEFVQKFS 216
           +L+ +RD  +T    +IP L I    P  +F+F A +   KR+ +  V  +  + V    
Sbjct: 519 ILWDRRDIILT---AAIPAL-ISTYDPKEKFMFSAFRNSEKRKELAHVLSDSQKSVLAAQ 574

Query: 217 VEVQVCNCSEVEE 255
            EVQ    ++V E
Sbjct: 575 DEVQSWLSADVPE 587


>02_01_0541 -
           3950336-3950353,3950660-3951061,3951174-3951431,
           3951554-3951754,3951861-3952203,3952286-3952344,
           3952757-3953082,3953283-3953745,3954180-3954794,
           3955600-3955896
          Length = 993

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 385 ESIPVFLLRILSRVLLYRRSWLLHHVRRYYLLPIDKLVIHS 507
           + IPVF +R++   + + RS LL H+  +Y+  + K ++ S
Sbjct: 314 QQIPVFFIRMVCPRIHFTRSLLLMHLGPFYIGDLLKWILVS 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,932
Number of Sequences: 37544
Number of extensions: 352387
Number of successful extensions: 1024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)