Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a13
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical ...    29   4.0  
AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical ...    29   4.0  
AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical ...    29   4.0  

>Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical
           protein R11A8.3 protein.
          Length = 506

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 303 IYLYTTTNNPLNQKLLLFYFTTVAHLH--FDTKLLHKLRTFSGHSI 172
           I L  T  N      +LFY  T++H H  F+TKL   L T SGH +
Sbjct: 8   ILLVCTIINEFYTLNILFYVPTLSHSHISFNTKLAQLLAT-SGHQV 52


>AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 86  FPFCLFFTCVLRSVLFSWRPSKETKG 163
           F FCLF TC+  + + S +PS  T G
Sbjct: 216 FLFCLFGTCLCCATMTSKKPSSRTTG 241


>AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 86  FPFCLFFTCVLRSVLFSWRPSKETKG 163
           F FCLF TC+  + + S +PS  T G
Sbjct: 216 FLFCLFGTCLCCATMTSKKPSSRTTG 241


>AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1a protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 86  FPFCLFFTCVLRSVLFSWRPSKETKG 163
           F FCLF TC+  + + S +PS  T G
Sbjct: 175 FLFCLFGTCLCCATMTSKKPSSRTTG 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,984,637
Number of Sequences: 27780
Number of extensions: 314684
Number of successful extensions: 947
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)