Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a12
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    27   0.23 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.23 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.23 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -3

Query: 266 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILLDLLT 87
           CSS RF+        C+ +     +I+    + FFN  ++  W++F     +  L+D++ 
Sbjct: 84  CSSFRFYWDL-----CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVV 138

Query: 86  N 84
           N
Sbjct: 139 N 139


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -3

Query: 266 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILLDLLT 87
           CSS RF+        C+ +     +I+    + FFN  ++  W++F     +  L+D++ 
Sbjct: 84  CSSFRFYWDL-----CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVV 138

Query: 86  N 84
           N
Sbjct: 139 N 139


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -3

Query: 266 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILLDLLT 87
           CSS RF+        C+ +     +I+    + FFN  ++  W++F     +  L+D++ 
Sbjct: 84  CSSFRFYWDL-----CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVV 138

Query: 86  N 84
           N
Sbjct: 139 N 139


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 64  RYCFHDKLVNKSSRMKLVRFLMKLSHETVTIELKNGS 174
           RYC     VN +SRM+     M++     T EL + S
Sbjct: 537 RYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSPS 573


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 349 RSTKSLKADCLEVDD 305
           +S+KSL A+ L++DD
Sbjct: 336 KSSKSLLANVLDIDD 350


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 349 RSTKSLKADCLEVDD 305
           +S+KSL A+ L++DD
Sbjct: 336 KSSKSLLANVLDIDD 350


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 349 RSTKSLKADCLEVDD 305
           +S+KSL A+ L++DD
Sbjct: 336 KSSKSLLANVLDIDD 350


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 349 RSTKSLKADCLEVDD 305
           +S+KSL A+ L++DD
Sbjct: 336 KSSKSLLANVLDIDD 350


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 349 RSTKSLKADCLEVDD 305
           +S+KSL A+ L++DD
Sbjct: 336 KSSKSLLANVLDIDD 350


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 349 RSTKSLKADCLEVDD 305
           +S+KSL A+ L++DD
Sbjct: 336 KSSKSLLANVLDIDD 350


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 349 RSTKSLKADCLEVDD 305
           +S+KSL A+ L++DD
Sbjct: 404 KSSKSLLANVLDIDD 418


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 349 RSTKSLKADCLEVDD 305
           +S+KSL A+ L++DD
Sbjct: 404 KSSKSLLANVLDIDD 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,100
Number of Sequences: 438
Number of extensions: 2768
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)