Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12a08
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 160 2e-40
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 156 3e-39
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 152 4e-38
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 147 2e-36
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 135 7e-33
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 116 3e-27
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 95 1e-20
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 31 0.13
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 31 0.13
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 30 0.30
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 30 0.39
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 29 0.68
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 29 0.90
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 28 1.6
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 27 2.8
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 2.8
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 27 3.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 3.6
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 27 3.6
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 25 8.4
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.4
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 25 8.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 8.4
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 160 bits (389), Expect = 2e-40
Identities = 73/161 (45%), Positives = 112/161 (69%), Gaps = 4/161 (2%)
Frame = +3
Query: 261 KKGFEFTLMVVGESGLGKSTLVNSLFLTDLY----PERVIPDATEKTNQTVKLDASTVEI 428
+ G FTLM+ GESGLGK+T N+LF T + PE+V EKT V+++ + E+
Sbjct: 24 RNGVAFTLMLCGESGLGKTTFCNTLFSTTIKSHMGPEKVRAKHAEKT---VEIEITKAEL 80
Query: 429 EERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIVDNRIHC 608
EE+ LRLTV+DTPG+GD I+N+ C+ S++++I++Q E ++R + +RR I+D RIH
Sbjct: 81 EEKNFHLRLTVIDTPGFGDFINNSGCWESVVEFIEDQHESYMRQDQQPDRRKIIDMRIHA 140
Query: 609 CFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLTK 731
C YF+ P +G++P+D+E MK + +VN++PVIAKAD T+
Sbjct: 141 CLYFLRPVRNGVRPMDLEAMKHISKRVNLIPVIAKADMYTR 181
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 194 NLETPGYVGFANLPNQVHR 250
N E +VG A+LPNQ H+
Sbjct: 2 NEEETNFVGIADLPNQRHK 20
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 156 bits (379), Expect = 3e-39
Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 3/159 (1%)
Frame = +3
Query: 261 KKGFEFTLMVVGESGLGKSTLVNSLFLTDLYP---ERVIPDATEKTNQTVKLDASTVEIE 431
++GF F ++V+GESG GKSTLVN+L D+YP + + D TV +++S VEI
Sbjct: 91 RQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDFGVNPEPTVMINSSAVEIV 150
Query: 432 ERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIVDNRIHCC 611
E G+ L+L V+DTPG+GD IDNTDC++ ++ I+ +++++L E R I D R+H C
Sbjct: 151 ENGISLQLNVIDTPGFGDFIDNTDCWQPVLTDIEGRYDQYLELEKHNPRSTIQDPRVHAC 210
Query: 612 FYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLT 728
+FI P GH + +++ M LH KVNI+P+IAKAD LT
Sbjct: 211 IFFIQPTGHAISAMELRVMLALHEKVNIIPIIAKADTLT 249
Score = 35.5 bits (78), Expect = 0.008
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 209 GYVGFANLPNQVHRKSVKKRF 271
GYVGFA+LPNQ HR+ V++ F
Sbjct: 74 GYVGFASLPNQWHRRCVRQGF 94
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 152 bits (369), Expect = 4e-38
Identities = 71/157 (45%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Frame = +3
Query: 261 KKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERG 440
++GF+F +MVVG SG GKSTL+N+LF L + D QT ++ ++ + E
Sbjct: 28 RRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYRQTTEIHVTSQVVRENR 87
Query: 441 VKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNR-RNIVDNRIHCCFY 617
V+L+L ++DTPGYGD I+N C+ II+YI +Q +LR E +R + + D R+HCC +
Sbjct: 88 VQLQLNLIDTPGYGDQINNDKCWEPIIKYIRDQHSSYLRRELNSHREKRLQDTRVHCCLF 147
Query: 618 FISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLT 728
FI P GH L+P+DI +K+L VN+VPVIAK+D LT
Sbjct: 148 FIRPTGHSLRPIDIAVLKRLTEVVNVVPVIAKSDSLT 184
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 147 bits (356), Expect = 2e-36
Identities = 75/162 (46%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Frame = +3
Query: 249 ENL*K-KGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK-TNQTVKLDASTV 422
ENL K K T+M+ G SG GK+T N+LF T L PE+ A E +T+++ +
Sbjct: 21 ENLIKRKECGLTIMLCGASGTGKTTFFNTLFATSLQPEKSYETAKETIAKKTLEVKKNKA 80
Query: 423 EIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIVDNRI 602
IEE G + LTV+DTPG+GD IDNT C+ ++ +Y+DEQ ER+L + R D R+
Sbjct: 81 VIEEDGFHINLTVLDTPGFGDFIDNTSCWNTVAEYLDEQHERYLIHDQNSLRVPRKDTRV 140
Query: 603 HCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLT 728
H C YFI+P G+ PLD+ MK+L VN+VPVIAKAD T
Sbjct: 141 HVCLYFITPVSFGMLPLDVLAMKELSTHVNLVPVIAKADTFT 182
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 135 bits (326), Expect = 7e-33
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 3/167 (1%)
Frame = +3
Query: 237 IRYTENL*KKGFEFTLMVVGESGLGKSTLVNSLFLTDL--YPERVIPDATEKTNQTVKLD 410
+R T+ KKG LMVVG+ GLG++ +N+L L + P + +
Sbjct: 40 MRTTKKSSKKGIPLNLMVVGDVGLGRTAFINTLCEKPLIRHNNNFDPAEASSVSPVEIVP 99
Query: 411 ASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRR-NI 587
T I E G K+ LTV+DTP +G+AIDN + F I+QYI+ Q++ L +ES + R
Sbjct: 100 YQTDIILEDGTKINLTVLDTPHFGEAIDNENNFDIILQYIESQYDNVLEEESRIKRNARF 159
Query: 588 VDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLT 728
D+R+H YFISP GHGL+ LDIE M++L +VNI+P IAKAD LT
Sbjct: 160 CDDRVHALIYFISPTGHGLRELDIELMRRLAPRVNIIPAIAKADSLT 206
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 116 bits (279), Expect = 3e-27
Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Frame = +3
Query: 261 KKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERG 440
+ G + L+VVGES LGK+T VNS ++ D + +T+ + +
Sbjct: 114 RNGIDINLIVVGESSLGKTTFVNSFLQSN--------DTNFRPKKTMDFVEHKATLSDGD 165
Query: 441 VKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNI-VDNRIHCCFY 617
K LT+VDTPG+GD DN++C+R I + + + ++E ++R +D+RIH C +
Sbjct: 166 QKFNLTIVDTPGFGDKSDNSNCWRPIATNLLHRLNAYFQNEVKMDRETSEIDSRIHGCLF 225
Query: 618 FISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLT 728
FI+P GH L+PL+I MK++ VNI+PVI KAD +T
Sbjct: 226 FINPNGHRLQPLEIYIMKKIDQFVNIIPVIGKADTMT 262
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 94.7 bits (225), Expect = 1e-20
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Frame = +3
Query: 261 KKGFEFTLMVVGESGLGKSTLVNSLFLTD-LYPERVIPDATEKTNQTVKLDASTVEIEER 437
KKG + +MV G S +NSL L E I ++ +++ +I E
Sbjct: 14 KKGKKLRIMVAGSSYTSYQACINSLCSKQILEAETEIDPLKAHIDRILEIREFNADILED 73
Query: 438 GVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRN-IVDNRIHCCF 614
+ LTV++ G+GD IDN+ F + Y++ QF++ L +ES + R + D R+
Sbjct: 74 EFHVDLTVIEVNGFGDKIDNSASFEVVTHYLESQFDQALIEESKIKRNSKFTDTRVDALL 133
Query: 615 YFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLTK 731
YFI+P GH L D+E MK+ +VN++PVI ++ T+
Sbjct: 134 YFIAPRGHCLSEFDLEAMKRFSKRVNVIPVIGNSNAFTE 172
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 31.5 bits (68), Expect = 0.13
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 461
L+VVGE+G GK+T + D Y + T+ A V EE GV+L TV
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVS-EEMGVRLGSTV 569
Query: 462 VDTPGYGDAIDNTDCFRSIIQYIDE 536
GY ++ ++I+Y+ +
Sbjct: 570 ----GYSIRFEDVTGPDTVIKYMTD 590
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 431
F L+++G+SG+GKS L+ F D Y E I + +T +L+ TV+++
Sbjct: 9 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK--TNQTVKLDASTVEI 428
L+VVG+ G GK+ L+ +F + +PER +P E T+ T ++ +E+
Sbjct: 17 LVVVGDGGCGKTCLL-IVFSSGTFPERYVPTVFENYITDITYGPNSKVIEL 66
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.9 bits (64), Expect = 0.39
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +3
Query: 285 MVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 431
+++G +G GKST+V+++ + +P +++ A E + +K +T IE
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLGWPPKLLGRAKE-AREFIKYGKNTATIE 84
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.1 bits (62), Expect = 0.68
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 612 FYFISPFGHGLKPLDIEFMKQLH--NKVNIVPVIAK 713
FY IS FG+GL+ E+++ +H KVN P + K
Sbjct: 323 FYCISNFGYGLR----EYLRYIHQKQKVNAAPAVPK 354
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 28.7 bits (61), Expect = 0.90
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 540 FERFLRDESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQL--HNKVNIVPVIAK 713
F++ L+D G R +I+DN C S F + PL + + + N VN V V+ K
Sbjct: 1188 FQKLLKDAKGQLRIHIIDNMSRICLRETSLF---ISPLMLSTLDMIIAENNVNEVSVLFK 1244
Query: 714 A 716
+
Sbjct: 1245 S 1245
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 431
L+++G+SG+GKS L+ P + + +T++LD ++++
Sbjct: 12 LLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQ 61
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 27.1 bits (57), Expect = 2.8
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 273 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLR 452
+F L+ +GE +GK++L+ + F+ D + D T + + + T+ +E+R V+L+
Sbjct: 11 KFKLVFLGEQSVGKTSLI-TRFMYDQF------DNTYQATIGIDFLSKTMYLEDRTVRLQ 63
Query: 453 LTVVDTPG 476
L DT G
Sbjct: 64 LW--DTAG 69
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 158 LKMSNETNKTFSNLETPGYVGFANLPNQVHRKSVK---KRFRVHPNGG 292
L +N +N TFS+ VG HR S++ + + +PNGG
Sbjct: 45 LLYNNASNATFSSAALAAGVGGTRASGYTHRFSIRPSSQTYNRYPNGG 92
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 588 VDNRIHCCFYFISPFGHGLKPLDIEFMKQLHN 683
+D C F+S F H L P + KQL N
Sbjct: 562 IDALSSCMEEFVSSFSHELTPFASQLAKQLRN 593
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 3.6
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 288 VVGESGLGKSTLVNSLFLTDLYP-ERVIPDATEKTN-QTVKLDASTVEIEERGVKLRLTV 461
+VG SG GKSTLV L T YP E + D TN T L ++++ L T+
Sbjct: 1133 IVGISGSGKSTLVELLRKT--YPSEDIYIDGYPLTNIDTNWLLKKVAIVDQKPHLLGSTI 1190
Query: 462 VDTPGYG 482
+++ YG
Sbjct: 1191 LESLLYG 1197
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 273 EFTLMVVGESGLGKSTLVNSLFLTDLYPE 359
E+ L+VVG+ G+GKS L L + E
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDE 36
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 357 ERVIPDATEKTNQTVKLDAST-VEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYID 533
E ++ D + KL A + +EE V+ GY CFRSI+ + +
Sbjct: 147 ETLMTDIKDVVEHAAKLGAQRLITLEELPVQWHNNPYIIRGYRFYTSKRKCFRSILSWHN 206
Query: 534 EQF 542
E F
Sbjct: 207 ETF 209
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Frame = -2
Query: 349 KSVKNKELTRVDLPSPLSPTTIR---------VNSKPFFYRFSV 245
K + +VDLP P++ TI VNS+ FFY F V
Sbjct: 388 KDFNGLQAAKVDLPGPINSYTISSDRSVVAILVNSQIFFYSFPV 431
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 261 KKGFEFTLMVVGESGLGKSTLVN 329
KK ++++GESG+GK++++N
Sbjct: 4 KKKHLLKVIILGESGVGKTSIMN 26
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 8.4
Identities = 22/85 (25%), Positives = 41/85 (48%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 461
++VVGE+G GKST + FL + + A + + ++ + E+G +L V
Sbjct: 115 IVVVGETGSGKSTQIPQ-FLNECPYAQEGCVAITQPRRVAAVNLAKRVAAEQGCRLGEQV 173
Query: 462 VDTPGYGDAIDNTDCFRSIIQYIDE 536
GY D+T ++ I+Y+ +
Sbjct: 174 ----GYSIRFDDTTSKKTRIKYLTD 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,204
Number of Sequences: 5004
Number of extensions: 50653
Number of successful extensions: 263
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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