Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12a08
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 172 2e-43
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 130 8e-31
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 130 8e-31
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 130 8e-31
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 34 0.090
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 34 0.090
U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical pr... 33 0.16
U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical pr... 33 0.16
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 32 0.36
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 31 0.64
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 31 0.84
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 31 0.84
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 31 1.1
U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein. 31 1.1
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 30 1.9
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 30 1.9
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 30 1.9
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 30 1.9
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 30 1.9
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 29 2.6
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 29 2.6
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 29 2.6
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 29 4.5
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 28 5.9
U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical p... 28 5.9
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 28 5.9
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 7.8
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 28 7.8
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 28 7.8
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 28 7.8
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 28 7.8
AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal m... 28 7.8
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 28 7.8
AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal m... 28 7.8
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 172 bits (419), Expect = 2e-43
Identities = 81/159 (50%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Frame = +3
Query: 261 KKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDA-TEKTNQTVKLDASTVEIEER 437
K GF+FTLMVVG SGLGKST +N+LFL ++ A T TV+++ V++ E
Sbjct: 43 KNGFDFTLMVVGRSGLGKSTFINTLFLAEINNLNEKESAPTHPHPSTVRVEEKLVKLVEN 102
Query: 438 GVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNR-RNIVDNRIHCCF 614
V L LT+VDTPG+GDA++N+ C+ I+ Y++ +F +E+ ++R IVD +H C
Sbjct: 103 SVSLNLTLVDTPGFGDAVNNSKCWEPIVNYVESKFFEQFCEETRIDRGEKIVDKCVHLCL 162
Query: 615 YFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLTK 731
YFI P GHGLKP+DIE MK LH +VNIVPVI+KADCLT+
Sbjct: 163 YFIEPSGHGLKPIDIELMKHLHGRVNIVPVISKADCLTR 201
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 167 SNETNKTFSNLETPGYVGFANLPNQVHRKSVKKRF 271
++E+ +T + E P Y GFAN PNQV R++VK F
Sbjct: 12 NDESLRTGQHKENPNYWGFANFPNQVFRRAVKNGF 46
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 130 bits (315), Expect = 8e-31
Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Frame = +3
Query: 267 GFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVK 446
GF+F LM VGE+G GK+TL+ SLF L E P E +TV+L T ++ E G++
Sbjct: 97 GFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCNHEL--KTVELRTCTKDVAEGGIR 151
Query: 447 LRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNR--RNIVDNRIHCCFYF 620
++L +V+T G+GD +D + I+ Y++ QFE +L++E R + D+RIH C YF
Sbjct: 152 VKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQEELKPRRMLQYFNDSRIHACLYF 211
Query: 621 ISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLTK 731
ISP GHGLK LD+ +++L +VN++PVIAK+D K
Sbjct: 212 ISPTGHGLKALDLVTLRELAKRVNVIPVIAKSDTTCK 248
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 130 bits (315), Expect = 8e-31
Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Frame = +3
Query: 267 GFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVK 446
GF+F LM VGE+G GK+TL+ SLF L E P E +TV+L T ++ E G++
Sbjct: 97 GFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCNHEL--KTVELRTCTKDVAEGGIR 151
Query: 447 LRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNR--RNIVDNRIHCCFYF 620
++L +V+T G+GD +D + I+ Y++ QFE +L++E R + D+RIH C YF
Sbjct: 152 VKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQEELKPRRMLQYFNDSRIHACLYF 211
Query: 621 ISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLTK 731
ISP GHGLK LD+ +++L +VN++PVIAK+D K
Sbjct: 212 ISPTGHGLKALDLVTLRELAKRVNVIPVIAKSDTTCK 248
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 130 bits (315), Expect = 8e-31
Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Frame = +3
Query: 267 GFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVK 446
GF+F LM VGE+G GK+TL+ SLF L E P E +TV+L T ++ E G++
Sbjct: 166 GFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCNHEL--KTVELRTCTKDVAEGGIR 220
Query: 447 LRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNR--RNIVDNRIHCCFYF 620
++L +V+T G+GD +D + I+ Y++ QFE +L++E R + D+RIH C YF
Sbjct: 221 VKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQEELKPRRMLQYFNDSRIHACLYF 280
Query: 621 ISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLTK 731
ISP GHGLK LD+ +++L +VN++PVIAK+D K
Sbjct: 281 ISPTGHGLKALDLVTLRELAKRVNVIPVIAKSDTTCK 317
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 431
F L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 12 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 431
F L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 12 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical
protein C18B2.5b protein.
Length = 699
Score = 33.5 bits (73), Expect = 0.16
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Frame = +3
Query: 279 TLMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGV 443
TL++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 468 TLLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVL 523
Query: 444 KLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIVDNRI-HCCFYF 620
+TVVDTPG D + N +++ + I + FE+ L +SG R + + + H
Sbjct: 524 PYNVTVVDTPGVEDKMGN----KTVSRLIKQWFEKELL-KSGSFRLDAISIVLRHDENQL 578
Query: 621 ISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCL 725
PF + L + F L K N++P+I ++ L
Sbjct: 579 GWPFIYELADVKRMFGDDL--KTNVLPIITNSEVL 611
>U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical
protein C18B2.5a protein.
Length = 673
Score = 33.5 bits (73), Expect = 0.16
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Frame = +3
Query: 279 TLMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGV 443
TL++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 442 TLLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVL 497
Query: 444 KLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIVDNRI-HCCFYF 620
+TVVDTPG D + N +++ + I + FE+ L +SG R + + + H
Sbjct: 498 PYNVTVVDTPGVEDKMGN----KTVSRLIKQWFEKELL-KSGSFRLDAISIVLRHDENQL 552
Query: 621 ISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCL 725
PF + L + F L K N++P+I ++ L
Sbjct: 553 GWPFIYELADVKRMFGDDL--KTNVLPIITNSEVL 585
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +3
Query: 273 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLR 452
E+ MVVG +GKS+L+N++ L +R +A + TV++ + V I + K
Sbjct: 115 EYQAMVVGIPNVGKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQ-NRVRILD---KPP 170
Query: 453 LTVVDTPG 476
+ ++DTPG
Sbjct: 171 VYIIDTPG 178
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTV--EIEERGVKL 449
F ++++G+SG+GKS L++ + + E E +++ ++ TV +I + +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATRSISVEGKTVKAQIWDTAGQE 71
Query: 450 RLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIV 590
R + + Y A+ + E ER+L++ +NIV
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLKELRDHADQNIV 118
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLR 452
F L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++
Sbjct: 10 FKLLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIK 59
Query: 453 LTVVDTPG 476
L + DT G
Sbjct: 60 LQIWDTAG 67
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLR 452
F L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++
Sbjct: 10 FKLLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIK 59
Query: 453 LTVVDTPG 476
L + DT G
Sbjct: 60 LQIWDTAG 67
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 273 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 431
+F L+++GES +GKS+LV + + QTV LD +T++ E
Sbjct: 19 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDATIKFE 71
>U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein.
Length = 70
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST--VEIEERGVKLR 452
++++G+SG+GK++L+N + DL + V + T+ D T V I++R V L+
Sbjct: 12 VIILGDSGVGKTSLMNQYEIGDLMNQYVNRRFMNQYKATIGADFLTRDVNIDDRTVTLQ 70
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 273 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST 419
E+ L+VVG+ G+GKS L L + + + E P + + V +D T
Sbjct: 3 EYKLVVVGDGGVGKSALTIQL-IQNHFVEEYDPTIEDSYRKQVVIDGET 50
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSL--FLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 455
L + G GK +L N + F T + PERV PD E N K+ +T + R V L +
Sbjct: 174 LRIYGARNCGKKSLANRIHHFATSMAPERVDPD--ENGNDYTKM--TTFLLNGREVTLEI 229
Query: 456 TVVDT 470
+ T
Sbjct: 230 LLEST 234
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 273 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST 419
E+ L+VVG+ G+GKS L L + + + E P + + V +D T
Sbjct: 6 EYKLVVVGDGGVGKSALTIQL-IQNHFVEEYDPTIEDSYRKQVVIDGET 53
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 455
F L+++G+SG+GKS+L+ F + + E I T+ +D ++ G +++L
Sbjct: 11 FKLLIIGDSGVGKSSLL-LRFADNTFSENYI--------TTIGVDFKIRTMDINGQRVKL 61
Query: 456 TVVDTPG 476
+ DT G
Sbjct: 62 QIWDTAG 68
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTV--EIEERGVKL 449
F ++++G+SG+GKS L++ + E E +++ ++ TV +I + +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSISVEGKTVKAQIWDTAGQE 71
Query: 450 RLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIV 590
R + + Y A+ + E ER+L++ +NIV
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLKELRDHADQNIV 118
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 455
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 456 TVVDTPG 476
+ DT G
Sbjct: 60 QIWDTAG 66
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 455
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 456 TVVDTPG 476
+ DT G
Sbjct: 60 QIWDTAG 66
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 455
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 456 TVVDTPG 476
+ DT G
Sbjct: 60 QIWDTAG 66
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSLFLTDLY-PERVIPDATEKTNQTVKLDASTVEI 428
++++GESG+GKS+L+ F+ D++ PE+ + ++ +D + V++
Sbjct: 14 ILIIGESGVGKSSLM-LRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKL 62
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 455
F L+++G+SG+GKS+L+ F + + E I T V T++I + VKL++
Sbjct: 11 FKLLIIGDSGVGKSSLL-LRFADNTFSENYI------TTIGVDFKIRTMDINGQRVKLQI 63
>U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical
protein C37C3.3 protein.
Length = 265
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 429 EERGVKLRLT-VVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRD 560
E+R V + + PG+ +AID D R ++ E ++ L D
Sbjct: 183 EQREVAKEIADAISNPGFNNAIDEADLLRELVDLEQEALDKDLLD 227
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 276 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 431
+ + VVG++G GKS+L++ L +T Y + D + TV + VE +
Sbjct: 238 YKIYVVGDTGTGKSSLISQL-ITSEY-KNAFADEIQDYENTVSICIGGVECD 287
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 279 TLMVVGESGLGKSTLVNSLF 338
T+ +VG SG GKSTL+ LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical
protein T01B7.3 protein.
Length = 207
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +3
Query: 252 NL*KKGFEFTLMVVGESGLGKSTLV 326
N+ +K F+F ++++GE +GKS+LV
Sbjct: 5 NVDQKSFKFKIVLLGEGCVGKSSLV 29
>Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical
protein F14F3.2 protein.
Length = 670
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = -2
Query: 472 GVSTTVKRSFTPRSSISTVDASNFTVW-----FVFSVASGITRSGYKSVKNKELTRVDLP 308
G+S + P S +T+D S+ VW ++S T + +N+ELT+ L
Sbjct: 392 GISCSPISGIVPNSQANTLDESSSRVWDELLEMKERLSSTETMVVTLTKQNEELTK--LV 449
Query: 307 SPLSPTTIRVNSKPFFYRFSVYLIRQIGKSNITR 206
L I +NS+ +R +Y ++ ++N+TR
Sbjct: 450 HSLQAQNINLNSELITFRDDLYNLK---RTNMTR 480
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/85 (23%), Positives = 41/85 (48%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 461
+++VGE+G GK+T + L D + + + T+ + + + +E GV L V
Sbjct: 460 VIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQ-PRRVAAMSVARRVADEMGVDLGQDV 518
Query: 462 VDTPGYGDAIDNTDCFRSIIQYIDE 536
GY ++ ++II+Y+ +
Sbjct: 519 ----GYAIRFEDCTSEKTIIKYMTD 539
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSLFLTDLYP 356
+ +VGE+G GK+TL+ L L DL P
Sbjct: 526 ICIVGENGAGKTTLL-KLLLDDLQP 549
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 279 TLMVVGESGLGKSTLVNSLF 338
T+ +VG SG GKSTL+ LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 279 TLMVVGESGLGKSTLVNSLF 338
T+ +VG SG GKSTL+ LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 279 TLMVVGESGLGKSTLVNSLF 338
T+ +VG SG GKSTL+ LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/85 (23%), Positives = 41/85 (48%)
Frame = +3
Query: 282 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 461
+++VGE+G GK+T + L D + + + T+ + + + +E GV L V
Sbjct: 460 VIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQ-PRRVAAMSVARRVADEMGVDLGQDV 518
Query: 462 VDTPGYGDAIDNTDCFRSIIQYIDE 536
GY ++ ++II+Y+ +
Sbjct: 519 ----GYAIRFEDCTSEKTIIKYMTD 539
>AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform c protein.
Length = 565
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +3
Query: 279 TLMVVGESGLGKSTLVNSLFLTDLYPERVI 368
TL++ G+SG+GK++L+ + D++P + I
Sbjct: 409 TLLITGDSGIGKTSLMR--VIADMWPHQGI 436
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +3
Query: 279 TLMVVGESGLGKSTLVNSLFLTDLYPERVI 368
TL++ G+SG+GK++L+ + D++P + I
Sbjct: 437 TLLITGDSGIGKTSLMR--VIADMWPHQGI 464
>AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform a protein.
Length = 598
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +3
Query: 279 TLMVVGESGLGKSTLVNSLFLTDLYPERVI 368
TL++ G+SG+GK++L+ + D++P + I
Sbjct: 409 TLLITGDSGIGKTSLMR--VIADMWPHQGI 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,067
Number of Sequences: 27780
Number of extensions: 275661
Number of successful extensions: 980
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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