Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a06
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   0.80 
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   3.2  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   7.4  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    24   9.8  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    24   9.8  

>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -1

Query: 275 FYLLNCQRHLPRFSNNQITIFVKNAQEYRSNEGDIWRPVPKAPFSATL 132
           FY LN   +   F ++      KN   Y+  EGDI  P PK PF   L
Sbjct: 38  FYPLNKIVNYNHFHSSSCQSEAKNF--YKQFEGDISDPPPKGPFDIDL 83


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 132 VINCFHHNMMTGFISEIENNI 70
           ++NCF+H   T  +S + +NI
Sbjct: 683 LVNCFNHTSFTSLLSFLSSNI 703


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 144 FSHTVINCFHHNMMTGFISEIENNIYSV 61
           FS T  +C+ HN++    S+   N+++V
Sbjct: 614 FSTTPFDCYGHNVLIRTPSKFSENLWAV 641


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 230 NQITIFVKNAQEYRSNEGDIWRPVPKA 150
           N  +IF+ N   YR N   I   VP++
Sbjct: 264 NPFSIFIDNGHRYRCNSCGIVNEVPQS 290


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 284 SCGFYLLNCQRHLPRFSNNQITIFVKN 204
           SC FY LN  RH    S N  +  ++N
Sbjct: 83  SCYFYFLNWLRHFAPQSKNIASSHIQN 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,470
Number of Sequences: 5004
Number of extensions: 42262
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)