Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12a06
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0610 + 19307537-19308011,19308187-19310846                       30   1.0  
04_03_0357 + 14852584-14853058,14853116-14855754                       30   1.0  
12_02_0189 + 15165485-15168694                                         29   1.4  

>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 312 LKYINSSILLVWFLSPELPTTPAPIFKQSDHDLCKK 205
           L+Y+ SS L VW L  E P T      +  H LC +
Sbjct: 60  LRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCSQ 95


>04_03_0357 + 14852584-14853058,14853116-14855754
          Length = 1037

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 312 LKYINSSILLVWFLSPELPTTPAPIFKQSDHDLCKK 205
           L+Y+ SS L VW L  E P T      +  H LC +
Sbjct: 60  LRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCSQ 95


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 312 LKYINSSILLVWFLSPELPTTPAPIFKQSDHDLCKK 205
           ++Y  S  L +WF + ELP T     ++  H LCK+
Sbjct: 63  IRYKKSLALSMWFFNRELPETIMVFTEKQIHVLCKQ 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,529
Number of Sequences: 37544
Number of extensions: 239939
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)