Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p17
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.5  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   3.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.2  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 24  MPSSFLSYVK*LKLNNIYIVEHNASYQGFGGHFS 125
           +PS +L+Y K +  NNI I   N +Y+   G F+
Sbjct: 42  VPSIYLTYAKNILPNNISIAGQN-TYKVAKGAFT 74


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +1

Query: 187 DTHLPAPNPTEKRPYSPFQDA---SNMAEMAVARLD-DLLNWGRKGSLWPMTFGLACCAV 354
           D  LP   PT+K    P QD      +  + V R++  +L  G   +  P        +V
Sbjct: 233 DAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSV 292

Query: 355 EMMHIA 372
           EM H A
Sbjct: 293 EMHHEA 298


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 115 ATSPNTVLSFMKKGVFTPVVS 177
           AT+PN + +  K  +FT V S
Sbjct: 76  ATNPNAMKTIFKNTIFTNVAS 96


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +1

Query: 187 DTHLPAPNPTEKRPYSPFQDA---SNMAEMAVARLD-DLLNWGRKGSLWPMTFGLACCAV 354
           D  LP   PT+K    P QD      +  + V R++  +L  G   +  P        +V
Sbjct: 176 DAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSV 235

Query: 355 EMMHIA 372
           EM H A
Sbjct: 236 EMHHEA 241


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +1

Query: 187 DTHLPAPNPTEKRPYSPFQDA---SNMAEMAVARLD-DLLNWGRKGSLWPMTFGLACCAV 354
           D  LP   PT+K    P QD      +  + V R++  +L  G   +  P        +V
Sbjct: 233 DAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSV 292

Query: 355 EMMHIA 372
           EM H A
Sbjct: 293 EMHHEA 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,468
Number of Sequences: 438
Number of extensions: 4433
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)