Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p13
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    28   0.93 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   1.6  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   2.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.8  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    26   3.7  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   4.9  

>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 133 YSRTKLVQLLYQIMWPLILQFMRANAAYITLPVAALVGVIGYNLENILSDKYTPYNKSIE 312
           Y RT ++ + Y      IL  M     +I LP+A ++G +   L++ ++ + T YN   E
Sbjct: 434 YFRTWILVVFYGFASATILP-MSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFE 492


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 217  ITLPVAALVGVIGYNL----ENILSDKYTPYNKSIEDQRVDRLTDEVLKDPTNVKKLKYQ 384
            + + V+   G +G NL      IL + +  YN SIEDQ +DR+     + P  V +   +
Sbjct: 794  LVMLVSLKAGSVGLNLTIANHVILQEPF--YNPSIEDQAIDRVHRLGQQKPVTVYRFITK 851

Query: 385  ENVLGKNVSPSLEK 426
            + +  + VS   +K
Sbjct: 852  DTIEERIVSVQRKK 865


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 DKYTPYNKSIEDQRVDRLTDEV-LKDPTNVKKLKYQENVLGKNVSPSLEKD 429
           D ++  +K    +  +   DE  LK P   KK K+QE +  KN+  S  +D
Sbjct: 507 DSFSNISKKRNSEEANDENDETNLKIPIPEKKRKFQEVLQSKNILVSSTED 557


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 304  SIEDQRVDRLTDEVLKDPTNVKKLKYQENVLGKNVSPSLEKD*SYKKEFISFKRD 468
            S  ++++  L  E+L     V+ LK ++    K ++  LE     K   +SFK+D
Sbjct: 999  STREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLEDAVREKDSALSFKKD 1053


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 120 IEFKINLHVLNISEHLH*M*FISNYILVK 34
           IE+K+ L V N+SE+L     ++N I +K
Sbjct: 392 IEYKLRLLVQNVSENLQKRGLVTNSIAIK 420


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 2/109 (1%)
 Frame = +1

Query: 286  YTPYNKSIED--QRVDRLTDEVLKDPTNVKKLKYQENVLGKNVSPSLEKD*SYKKEFISF 459
            Y P   ++ D   ++ R   E L     VKK  Y  ++        +  +      FI F
Sbjct: 1052 YNPIMNTVYDPCMKLPRFKTEYLNVAEEVKK-HYDNDLRSIMARFDISTEYEVYTAFILF 1110

Query: 460  KRDSCIELKIHTMIEKILMQQMLLIIFDFCLRSGTRNMLERCNFSTTSA 606
            K D    +  + + E++  Q      FD   +  T+  LE+C  S  SA
Sbjct: 1111 KDDLAKTVNEYGLREEVSFQ------FDLLKKKYTQEYLEKCALSNQSA 1153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,918
Number of Sequences: 5004
Number of extensions: 45811
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)