Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p12
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   3.3  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   10.0 

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 115 TNCSASRSRSSLDLKPVSHMRRTTAPASLEETAFSCQGRSFKSI 246
           T+ S  R  SSL ++PVS   +   P+ LE+   + +  S K +
Sbjct: 312 TSNSTVRVASSLAVRPVSRNAQARTPSRLEQREVNVKNSSAKIV 355


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 321 EKQRYVRTLSCPS*GVWVSFLSLTLNGF 238
           E  R   TL  PS   WV FL+LTL  F
Sbjct: 609 EHPRRSFTLLFPSKTTWVLFLNLTLLNF 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,142
Number of Sequences: 5004
Number of extensions: 24576
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)