Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p12
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0501 - 18820554-18821548,18821960-18822182                       27   7.7  
04_03_0719 + 19006730-19007440                                         27   7.7  

>07_03_0501 - 18820554-18821548,18821960-18822182
          Length = 405

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +3

Query: 132 AFTQFPRPQAGVSH---ETDDGPRVPGGDRLL 218
           A  ++ RP   ++H    T  G + PGGDRLL
Sbjct: 128 AIAEWGRPATDITHLIFSTYSGVKAPGGDRLL 159


>04_03_0719 + 19006730-19007440
          Length = 236

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 460 RWGSGGLRLIRRTLNTEDDRWKTSSQSGDCER 555
           R G GGL +  R L  E D +KTS  SG   R
Sbjct: 26  RGGGGGLEMRWRELEREWDAYKTSRCSGASRR 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,954,311
Number of Sequences: 37544
Number of extensions: 168676
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)