Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p10
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...   116   4e-27
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   1.5  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   2.6  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.0  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   7.9  

>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score =  116 bits (278), Expect = 4e-27
 Identities = 71/180 (39%), Positives = 99/180 (55%)
 Frame = +1

Query: 160 MSLESIKYTRGSXXXXXXXXXXXQTRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLA 339
           MSL++I Y               + +YI V  VED + VI KMQVRGAPAIAIV  LS+A
Sbjct: 1   MSLQAIIYNEDKLLVLDQLLLPYERKYISVSNVEDAFAVIKKMQVRGAPAIAIVAALSVA 60

Query: 340 VELSPDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANTLCADDSISAEIF 519
           V L   +E +  + ++ +     +L  +RPTAVN+   A  +  +A           +  
Sbjct: 61  VGLKHLSEDA--DAKEYVINSFEHLKQSRPTAVNLFETAKFMQGIALQ-------EGKNC 111

Query: 520 KERFIGSIEDMLTKDIHDNKAIGSFGCEAILKNIDGDSPVRVLTHCNTGSLATAGYGTAL 699
           + + I   E ML KD+ DN  IG+ G + +L++      + VLTHCNTGSLAT+GYGTAL
Sbjct: 112 RNKIIQEAERMLVKDLEDNHNIGTAGRKFLLQHYKDKDKLTVLTHCNTGSLATSGYGTAL 171


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 530  NLSLKISAEILSSAQSVFAKFISSSAANFIFTAVGLAD 417
            N S+  S  IL SAQ   AKF+ +S +N     + L D
Sbjct: 1431 NESMLQSKRILDSAQQDVAKFVDTSQSNLDVQLISLKD 1468


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 328 LSLAVELSPDNESSKKNMRQEIEGKLN 408
           LS  +E S  +ESSK N+  E+E K++
Sbjct: 312 LSRQIEFSKKDESSKLNILSELESKIS 338


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/94 (24%), Positives = 41/94 (43%)
 Frame = -2

Query: 536 PINLSLKISAEILSSAQSVFAKFISSSAANFIFTAVGLADTR*LSLPSISCLMFFFEDSL 357
           P + S   S+   SS+ S  +   SSS+++   ++   + +   S  S S        S 
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214

Query: 356 SGDNSTASDKQPTMAMAGAPRTCILFITFQPSST 255
           S  +S++S    + + +  P +   FIT   SST
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSST 248


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +1

Query: 361 ESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANTLCADDSISAEIFKERFIGS 540
           ++ KKN +Q  + K N L   +       +  DE+   +        IS E+ KE   G+
Sbjct: 120 KTMKKNRKQSFQRKRNILEDGKSEEEKFPMKCDEIDPYSRQAIVIRYISDEVAKENIGGN 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,816
Number of Sequences: 5004
Number of extensions: 57159
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)