Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p10
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602...   144   6e-35
11_04_0367 - 16840732-16843428,16844425-16844760                       29   4.7  
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...    28   6.2  
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    28   6.2  
04_01_0625 - 8222105-8222462,8222574-8222926,8223029-8223204,822...    28   8.2  
02_04_0571 - 23963088-23963174,23963265-23963512,23963913-239639...    28   8.2  

>11_01_0728 +
           6023361-6023495,6024880-6025212,6025306-6025361,
           6025526-6025684,6025790-6025889,6026481-6026623,
           6026728-6026833,6027139-6027277,6027363-6027631,
           6027734-6027820
          Length = 508

 Score =  144 bits (349), Expect = 6e-35
 Identities = 82/181 (45%), Positives = 106/181 (58%), Gaps = 2/181 (1%)
 Frame = +1

Query: 163 SLESIKYTRGSXXXXXXXXXXXQTRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAV 342
           +L+SI Y RGS           +  YI V+   DGW  I  M VRGAPAIAI   L+LAV
Sbjct: 140 ALQSIVYHRGSLRLLDQRKLPLEVDYIDVKCSGDGWNAIRDMVVRGAPAIAIAAALALAV 199

Query: 343 ELS--PDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANTLCADDSISAEI 516
           E+S   D   +       +  KL YLVS+RPTAVN+  AA +L +L +     +  +  I
Sbjct: 200 EVSGLEDFTGTPAEAAVFVSEKLEYLVSSRPTAVNLSDAATKLRSLVSRTAETEKDAKAI 259

Query: 517 FKERFIGSIEDMLTKDIHDNKAIGSFGCEAILKNIDGDSPVRVLTHCNTGSLATAGYGTA 696
           F + +I + E ML  D+ DNKAIGS G E + + ++    + VLTHCNTGSLATAGYGTA
Sbjct: 260 F-QAYIDAAETMLVDDVSDNKAIGSHGAEFLKQKLEVSKDISVLTHCNTGSLATAGYGTA 318

Query: 697 L 699
           L
Sbjct: 319 L 319


>11_04_0367 - 16840732-16843428,16844425-16844760
          Length = 1010

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 373 FLKIH-CQVIIQRLVISNPLWLWLVLHGPAFYLLLSNHPQHLAL 245
           F+ IH C   +Q  V S+PLW  +++ G   Y  + N+P+H  L
Sbjct: 541 FMSIHNCDTSVQFSVTSHPLWA-IIVFGVKNYSRV-NNPEHFFL 582


>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 232 TRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAVELSPDNESSKKNMRQEI 393
           TRY++  GV  GW ++ K+  RGA  +A       A +L+      K+N+ +++
Sbjct: 146 TRYVQNGGVH-GWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLEDL 198


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 298 HGPAFYLLLSNHPQHLA 248
           HG A +LLL +HPQH+A
Sbjct: 25  HGHAGHLLLHHHPQHVA 41


>04_01_0625 -
           8222105-8222462,8222574-8222926,8223029-8223204,
           8223318-8223555,8226983-8227423
          Length = 521

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 188 LVYFMDSKLILSSQNI*FSVLNHWKKFIDIFKLLYWSFNLSMHL-IMHNDNLC 33
           L +FMD    L S ++  + +  W+KF+  +   Y+  +    L I +ND LC
Sbjct: 435 LAHFMDGGFRLPSISVMQNDVQEWEKFMKRYSRAYFRRSCIGFLHIWYNDKLC 487


>02_04_0571 -
           23963088-23963174,23963265-23963512,23963913-23963999,
           23964023-23964143,23964257-23964366,23964464-23964635,
           23965615-23965648,23965830-23965849
          Length = 292

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 26/104 (25%), Positives = 45/104 (43%)
 Frame = +1

Query: 235 RYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAVELSPDNESSKKNMRQEIEGKLNYL 414
           R I+V    DG  VIN   VRG+P +  + C+   V ++      + +  + +  K  Y 
Sbjct: 38  RDIRVTVESDGAFVINFKGVRGSPMVCAI-CIRKTVAIAEQVLDRQADQLRSVSQKYEY- 95

Query: 415 VSARPTAVNIKLAADELINLANTLCADDSISAEIFKERFIGSIE 546
                   N KL A  + NL N +  D   +A     + +G+++
Sbjct: 96  -------AN-KLWAAAISNLENKIKQDGHANAVPEPSKMVGAVQ 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,099,878
Number of Sequences: 37544
Number of extensions: 310567
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)