Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p10
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical pr...    90   1e-18
U23168-9|AAC38805.1|  196|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U29096-3|AAA68407.1|  961|Caenorhabditis elegans Uncoordinated p...    29   4.2  
AF034085-1|AAD01976.1|  961|Caenorhabditis elegans UNC-45 protein.     29   4.2  
Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxi...    28   7.4  
AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxi...    28   7.4  
Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical
           protein C01G10.9 protein.
          Length = 366

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 56/178 (31%), Positives = 94/178 (52%)
 Frame = +1

Query: 166 LESIKYTRGSXXXXXXXXXXXQTRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAVE 345
           L+S+K+   +           + +YI V GV D + VI  MQVRGAP IA+VG L L +E
Sbjct: 25  LDSLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLE 84

Query: 346 LSPDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANTLCADDSISAEIFKE 525
           +   +E   +++ Q    K+N+L+S+RPTAV+++ + + L  +  +    D +  E  + 
Sbjct: 85  IQKASELDSESIIQ----KINFLISSRPTAVDLRNSLNGLKPILESQDYSDVVKLEKCRS 140

Query: 526 RFIGSIEDMLTKDIHDNKAIGSFGCEAILKNIDGDSPVRVLTHCNTGSLATAGYGTAL 699
             +    ++ T +   N+ +     + +L        + V+T CNTGSLAT  +GTAL
Sbjct: 141 YLL----NVYTDEKLQNRILVWNAYQELLSAFPDKEKLTVMTICNTGSLATISWGTAL 194


>U23168-9|AAC38805.1|  196|Caenorhabditis elegans Hypothetical
           protein B0228.1 protein.
          Length = 196

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +1

Query: 367 SKKNMRQEIEGKLNYLVSARPTAV---NIKLAADELINLANTLCADDSISAEIFKERFIG 537
           ++K + ++++ K   LV AR   +   +   AA+++   A       ++ AE   ERF+G
Sbjct: 90  AQKGLVEDLDEKSAKLVKARVKRMIVYSFDPAAEQIHKYATRPSMAFALIAETINERFVG 149

Query: 538 SIEDML 555
           S++D++
Sbjct: 150 SVKDLI 155


>U29096-3|AAA68407.1|  961|Caenorhabditis elegans Uncoordinated
           protein 45 protein.
          Length = 961

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 457 DELINLANTLCADDSISAEIFKERFIGSIEDMLTKDIHDN 576
           D L+ L N     DSI   I KE+ I  IE+      H++
Sbjct: 751 DSLLTLTNLASVSDSIRGRILKEKAIPKIEEFWFMTDHEH 790


>AF034085-1|AAD01976.1|  961|Caenorhabditis elegans UNC-45 protein.
          Length = 961

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 457 DELINLANTLCADDSISAEIFKERFIGSIEDMLTKDIHDN 576
           D L+ L N     DSI   I KE+ I  IE+      H++
Sbjct: 751 DSLLTLTNLASVSDSIRGRILKEKAIPKIEEFWFMTDHEH 790


>Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical
           protein LLC1.2 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 427 PTAVNIKLAADELINLANTLCADDSISAEIFKE 525
           PT V+ K  A +  N+A +L  +D++SA++FK+
Sbjct: 23  PTCVDAKFQACQY-NMAQSLGLNDTVSAQLFKD 54


>AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform c protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 214 IDLRSLDYL*YILWILNSSYLVKIF 140
           +D   LDYL Y+LW+L   +++ IF
Sbjct: 34  VDYIDLDYLEYLLWLLLPFFILFIF 58


>AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform a protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 214 IDLRSLDYL*YILWILNSSYLVKIF 140
           +D   LDYL Y+LW+L   +++ IF
Sbjct: 34  VDYIDLDYLEYLLWLLLPFFILFIF 58


>Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical
           protein R11H6.4 protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 394 RSLASCFFLKIHCQVIIQRLVISNPLWLWLVLHGPAFYLLLSN 266
           RSL  CF + + C    + LV+S  L+   V H   F+  LS+
Sbjct: 34  RSLRLCFTMFLLCNNFCRLLVVSIILFYQSVTHPHRFFFFLSS 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,768,020
Number of Sequences: 27780
Number of extensions: 302812
Number of successful extensions: 757
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)