Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p10
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    27   0.17 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    26   0.30 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.4  

>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 630 ITIYIF*YSFTSKT-SYCFVIMYIFSEHIL-YAAYKPFFKNFS*DTVVSTKCICQIYQLI 457
           + +YIF  + + +T S  FVI    S+ ++ +    P   N   +T V     CQIY ++
Sbjct: 38  MVVYIFLSTKSLRTPSNLFVINLAISDFLMMFCMSPPMVINCYYETWVLGPLFCQIYAML 97

Query: 456 SCQFYIYSCW 427
              F   S W
Sbjct: 98  GSLFGCGSIW 107


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -1

Query: 630 ITIYIF*YSFTSKT-SYCFVIMYIFSEHIL-YAAYKPFFKNFS*DTVVSTKCICQIYQLI 457
           + +YIF  + + +T S  FVI    S  ++ +    P   N   +T V     CQIY ++
Sbjct: 72  MVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMVINCYYETWVLGPLFCQIYAML 131

Query: 456 SCQFYIYSCW 427
              F   S W
Sbjct: 132 GSLFGCGSIW 141


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 332 H*PLNYHLTMNLQK 373
           H P N+H+T+N  K
Sbjct: 497 HKPFNFHITINADK 510


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 332 H*PLNYHLTMNLQK 373
           H P N+H+T+N  K
Sbjct: 497 HKPFNFHITINADK 510


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 101 IFKLLYWSF 75
           IF +LYWSF
Sbjct: 458 IFNILYWSF 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,806
Number of Sequences: 438
Number of extensions: 3501
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)