Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p09
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...   173   1e-43
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...   173   1e-43
U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    83   2e-16
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    60   2e-09
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    45   7e-05
Z73423-1|CAA97776.2|  492|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U23528-2|AAK31387.1|  984|Caenorhabditis elegans Calsyntenin/alc...    28   6.1  
AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin p...    28   6.1  
AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    28   6.1  
Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    28   8.0  
Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical p...    28   8.0  
Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score =  173 bits (421), Expect = 1e-43
 Identities = 84/205 (40%), Positives = 132/205 (64%), Gaps = 2/205 (0%)
 Frame = +3

Query: 123 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 299
           ++ R+ PY+  GGS  AI+G+++A++ +DTR++    +I TRD +K+  L+++ +L  +G
Sbjct: 40  ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99

Query: 300 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 479
            + D L L ++LQ+R+  Y  ++   M+    A++LS  LYY+RFFPYY   +LAG+D  
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159

Query: 480 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALL 656
           GKG V+SYDPIG   R  + A G+A   + P LD QIG   +    E P L  ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219

Query: 657 KDVFISAAERDIYTGDSIYILIITA 731
           KD F  AAER+I TGD I+++I  A
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEA 244


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score =  173 bits (421), Expect = 1e-43
 Identities = 84/205 (40%), Positives = 132/205 (64%), Gaps = 2/205 (0%)
 Frame = +3

Query: 123 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 299
           ++ R+ PY+  GGS  AI+G+++A++ +DTR++    +I TRD +K+  L+++ +L  +G
Sbjct: 40  ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99

Query: 300 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 479
            + D L L ++LQ+R+  Y  ++   M+    A++LS  LYY+RFFPYY   +LAG+D  
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159

Query: 480 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALL 656
           GKG V+SYDPIG   R  + A G+A   + P LD QIG   +    E P L  ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219

Query: 657 KDVFISAAERDIYTGDSIYILIITA 731
           KD F  AAER+I TGD I+++I  A
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEA 244


>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 1/196 (0%)
 Frame = +3

Query: 156 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 335
           GG++VA+AGD+   I +D R+    +    DQKK+ K+++   +G  G   D  T+   +
Sbjct: 8   GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67

Query: 336 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 515
             R  +YE   N+++    +++M+S + Y  RF  Y+   ++AGLD   K  +   D IG
Sbjct: 68  MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIG 127

Query: 516 -HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDI 692
              A  +F A G+    L  + +N    +NM+       P E   A  + + +S  ERD 
Sbjct: 128 CVSAPRDFVAVGTGQEYLLGVCEN-FWRENMK-------PDELFEATAQSI-LSCLERDA 178

Query: 693 YTGDSIYILIITANGI 740
            +G    +  IT + +
Sbjct: 179 ASGWGAVVYTITKDKV 194


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 50/196 (25%), Positives = 88/196 (44%)
 Frame = +3

Query: 156 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 335
           G +++A+  +   V+G D+R S G  I +R   K+  ++++ V+  +G   DT  +  + 
Sbjct: 23  GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82

Query: 336 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 515
           +  + +Y    NK +T    +Q+    LY  R      S ++AG D +  G VY+    G
Sbjct: 83  KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIPIGG 141

Query: 516 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIY 695
             +R    A GS +  +Q  LD+Q             L  E+  A++K     A  RD  
Sbjct: 142 FVSRQRSTASGSGSTFVQGFLDSQ---------WRPNLTLEECKAIVKQAVGLATFRDGS 192

Query: 696 TGDSIYILIITANGIQ 743
           +G  + + +I   G Q
Sbjct: 193 SGGVVRLAVINKAGSQ 208


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 1/191 (0%)
 Frame = +3

Query: 156 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 335
           G +IVA+A     V+GAD+R + G  I  +  +K+ KL+ES      G   D   +T++L
Sbjct: 46  GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKML 105

Query: 336 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 512
              +++ E +   K+    A+ Q    +  Y+ +   Y+  ++ G+D  G   +Y     
Sbjct: 106 SGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYL--LIGGVDPTGPH-LYMCSAN 162

Query: 513 GHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDI 692
           G      F A GS +     +L+            +  + +++A  L++    +    D 
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDF---------KVDMTKDEAEKLVQRALEAGMHGDN 213

Query: 693 YTGDSIYILII 725
            +G+S+ ++II
Sbjct: 214 ASGNSLNLVII 224


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 31/130 (23%), Positives = 56/130 (43%)
 Frame = +3

Query: 195 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 374
           ++  D+R S+G  I ++   K+  + +  V    G   D    TR++     +YE     
Sbjct: 84  IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143

Query: 375 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 554
           S+T  A ++  +  LY  R     V +++AG D  G   ++  D  G   +    + GS 
Sbjct: 144 SITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ-IFKVDSEGDRCQLKVCSVGSG 202

Query: 555 AAQLQPLLDN 584
           +     +LDN
Sbjct: 203 SLNAYGILDN 212


>Z73423-1|CAA97776.2|  492|Caenorhabditis elegans Hypothetical
           protein C03A3.2 protein.
          Length = 492

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = -2

Query: 637 SLGKGASVTFCIFFKPI*LSRSGCSCAAAEPPARKLWRAQCPIGS*LYT----HPLPSLS 470
           +L + A+    I    + LS  G   AAA PPA          G  +Y     H +PSL 
Sbjct: 206 TLSRWAAFILMISLATMQLSSDG---AAAHPPAYNFHGFGSLFGCAVYAFMCHHSIPSLI 262

Query: 469 KPANTLDT*YGKNRL*YNIV 410
            P  T D  +GK  L Y +V
Sbjct: 263 TPMRTKDNVFGKIALVYGVV 282


>Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical
           protein F47B8.7 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = -2

Query: 412 VESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPVAPNT-VLSDNLN-----SFF 251
           V SI +    V+ L+ S   + ++ C  ++ + V   +  + N  VL   +N      FF
Sbjct: 218 VGSIMSAVAYVLTLILSI--LVMILCTIKINLKVRESKNSSNNLLVLQKKMNRVLLAQFF 275

Query: 250 WSLVYMENPVLRRVSAPITA*SSPAMATILPPLSA 146
             L++++ P    V  PI   S   +  +LP L A
Sbjct: 276 CPLIFIQAPFYYSVLGPIVGLSQGLVTDLLPLLFA 310


>U23528-2|AAK31387.1|  984|Caenorhabditis elegans
           Calsyntenin/alcadein homolog protein1, isoform a
           protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 567 QPLLDNQIGLKNMQNVTEAPLPREKAL 647
           +P  D Q+G   +QN+ E  LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833


>AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin
           protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 567 QPLLDNQIGLKNMQNVTEAPLPREKAL 647
           +P  D Q+G   +QN+ E  LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833


>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 500 LRPYRTLCAP*LPRWWFRCCTAATAPRQSNW-LKEYAECNRSSFA*GKGP 646
           LRP+   C P L  ++ RC +   A R ++    EY  C RS +  G  P
Sbjct: 259 LRPHEIECNPILSNFYKRCWSDNPASRPTSADCVEYFRCLRSEYPNGNVP 308


>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
           protein F13H10.4c protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 237 YTRDQKKLFKLSESTVLGATGCW 305
           YT+ Q K+ K+S S +LG+ G W
Sbjct: 337 YTKTQLKMAKVSLSNMLGSVGYW 359


>Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical
           protein F13H10.4b protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 237 YTRDQKKLFKLSESTVLGATGCW 305
           YT+ Q K+ K+S S +LG+ G W
Sbjct: 334 YTKTQLKMAKVSLSNMLGSVGYW 356


>Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical
           protein F13H10.4a protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 237 YTRDQKKLFKLSESTVLGATGCW 305
           YT+ Q K+ K+S S +LG+ G W
Sbjct: 341 YTKTQLKMAKVSLSNMLGSVGYW 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,427
Number of Sequences: 27780
Number of extensions: 391521
Number of successful extensions: 1178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)