Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p02
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    32   0.023
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   0.67 
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   1.2  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   1.5  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   2.7  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    25   3.5  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   4.7  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    24   6.2  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    24   6.2  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    24   6.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   6.2  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    24   8.2  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 32.3 bits (70), Expect = 0.023
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 232  FLNRFSIMLVFWWEDLSFCIGYPFFKIF 149
            FL RFS+     W +L   +GY FF IF
Sbjct: 1476 FLERFSMRYTHRWRNLGIFVGYVFFNIF 1503


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 0.67
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 161 EWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQM 262
           +++   + ++FP   Q D E I +L  DMR++ +
Sbjct: 729 KYIHFAREKVFPRLQQMDEEKISRLYSDMRRESL 762


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 307 NYIIYKLGSLGFQTLHLFLPHILY*FLNRFSIMLVF 200
           N +I   G  G +T   ++ H+L+  LNR ++ L++
Sbjct: 536 NLLILCKGFEGLETFFAYIVHLLHGVLNRNNVKLIY 571


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 206  QHDREAIQKLIQDMRKKQMQSLESK*TKF 292
            Q   E +  +IQDM KKQ    +S  T+F
Sbjct: 960  QRTNEVLLPVIQDMHKKQFVGTQSNLTQF 988


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 96  WLCTHRFLLDCSFFSTNQNILKNG*PIQKDKSSHQKTNMIEKRF 227
           WLCT    L C+  S   +I+      +  KSS  KTN++   F
Sbjct: 348 WLCTFFHALQCAIIS---SIVSQWFFYRDTKSSATKTNLVSHFF 388


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 275 IPDFAFVSSSYPVLIFESLLYHVG 204
           IP+   +S +YP LIFE+L   +G
Sbjct: 174 IPNTGTMSEAYPHLIFENLTSKLG 197


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 208 LVFWW-EDLSFCIGYPFFKIFWLVEKKEQSNRKRCV 104
           L FW  E L     Y     FWL++KK+Q +++R V
Sbjct: 23  LDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIV 58


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 230 FESLLYHVGFLVGRFVFL--YWLPI 162
           F+ +  +V F+VG  +FL  YW+ I
Sbjct: 269 FDFICNYVSFMVGSIIFLVVYWIGI 293


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 132 KNNPTGNDVYIAILPTSSFQLP 67
           K NP+ NDV  A L   SF+ P
Sbjct: 54  KFNPSENDVLCASLKIKSFETP 75


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 104 YTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPP 199
           YT FPV +  + NQP   E     T  QI  P
Sbjct: 422 YTLFPVPVDVYDNQPNNPESLAQTTLLQISTP 453


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 260 FVSSSYPVLIFESLLYHVGFLVGRFVFL 177
           F+ SSY   I +SLL   GFL    VFL
Sbjct: 526 FLDSSYYKPILDSLLGVFGFLADSKVFL 553


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 106 HIVSCWIVLFFQP 144
           H++SC+  LFF+P
Sbjct: 594 HVLSCYKTLFFEP 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,382
Number of Sequences: 5004
Number of extensions: 34903
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)