Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11p02
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.017
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    29   0.022
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.16 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   1.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   1.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   7.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.1 bits (62), Expect = 0.017
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 216  LSCWFSGGKICLFVLVTHSSK-YFGWLKKKNN--PTGNDVYIAILPTSSFQLPI 64
            L+ W  GG   ++ +V H  K    W +  NN  P GN V + ++P + + L +
Sbjct: 1481 LNAWSDGGCPMIYFVVEHKKKNQQEWNQVSNNVKPGGNFVVLDLVPATWYHLRV 1534


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 0.022
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +1

Query: 175 YKKTNLPTRKPT**RSDSKINTGYEEETNAKSGIQVNQVYK*YNLVFVVKRY*IHYV 345
           Y K+  P R P   + D+  + G+ + TN K+ + VN+ YK  NL    + Y  HYV
Sbjct: 415 YLKSRDPERTPY--QWDNSTSAGFSQ-TN-KTWLPVNENYKSLNLAAQKREYYSHYV 467


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +2

Query: 134 FFNQPKYFEE-WVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLE 274
           F N  K+ ++ +V N+K +      +HD   ++ LI D+RKKQ++SLE
Sbjct: 340 FINILKFLKQKYVKNSKLE---KVIKHD--ILRMLIIDLRKKQLKSLE 382


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = +3

Query: 51  EIFKLWVIGN---*KWVG---WLCTHRFLLDCS 131
           E+FK+W+ G+     W+    W+CT   L  C+
Sbjct: 126 EVFKVWIFGDLWCSIWLAVDVWMCTASILNLCA 158


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 191 RFVFLYWLPIL 159
           + VFLYWLP +
Sbjct: 333 KVVFLYWLPCI 343


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 132 KNNPTGNDVYIAILPTSSFQL 70
           K+NP G D   +++P  ++QL
Sbjct: 91  KHNPRGKDALWSLVPHMAWQL 111


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 96  ILPTSSFQLPIV*KF-LFRFL 37
           ILP +S  LP++ K+ LF F+
Sbjct: 285 ILPPTSLVLPLIAKYLLFTFI 305


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 93  GWLCTHRF 116
           GW+C HR+
Sbjct: 377 GWICEHRW 384


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 96  ILPTSSFQLPIV*KFL 49
           I+P++S  LP++ K+L
Sbjct: 287 IIPSTSLALPLLGKYL 302


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 192 KICLFVLVTHSSKYFGWLKKKNNPTGND 109
           K+ L ++  H+S    W +   N T N+
Sbjct: 113 KVILDLVPNHTSDQHKWFQMSINNTNNN 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,777
Number of Sequences: 438
Number of extensions: 2326
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)