Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11o24
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 184 DTPFSQLKLNEIGSWF 231
           ++P  QL LNEI +WF
Sbjct: 519 ESPDKQLTLNEIYNWF 534


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 251 RLPWPELSVEPGGDGNIST 307
           RLPW EL  +P  D   +T
Sbjct: 342 RLPWLELQEKPISDSTSTT 360


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 354 WQHGLLLCHQLWKN*APQELQIPLKN 431
           W   + +    WKN  P  L   LKN
Sbjct: 59  WNDKVFITIPRWKNGVPSNLNFFLKN 84


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 172 SSGQDRKAHVQQDYTPWGNHRK 107
           SSG D  +    DYT   N +K
Sbjct: 191 SSGDDLSSEWDSDYTDKSNEKK 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,261
Number of Sequences: 438
Number of extensions: 3160
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)