Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11o13
         (191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    23   4.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   7.4  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    23   7.4  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    22   9.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    22   9.8  

>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 173 YPLFNYNCNFLVYKNVSGN 117
           +PL N  CNFL+    S N
Sbjct: 140 FPLLNQLCNFLLSDRCSNN 158


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 191  FFFWDYYPLFNYNCNFLVYKNV 126
            FF W YY     NC  +V+  V
Sbjct: 4103 FFTWGYYIASVLNCPDIVFHTV 4124


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 179 DYYPLFNYNCNFLVYKNVSGNL 114
           +++P+   NCN L+Y +  GN+
Sbjct: 232 EFHPI---NCNHLMYSSSKGNI 250


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 188 FFWDYYPLFNYNCNFLVYK 132
           FF  YYP+   + N L+Y+
Sbjct: 25  FFSKYYPVLAVDGNLLLYR 43


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 137 YKNVSGNLLEVIQCRC 90
           Y   SGNLLE+ Q +C
Sbjct: 604 YIGPSGNLLEINQSQC 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,556
Number of Sequences: 5004
Number of extensions: 6153
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)