Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11o13
(191 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 1.3
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 1.3
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 21 1.8
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 20 2.3
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 20 2.3
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 20 2.3
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 20 2.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 19 4.1
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 19 5.4
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 19 5.4
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 19 5.4
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 19 7.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 19 7.1
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 19 7.1
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 18 9.4
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 18 9.4
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 18 9.4
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 110 LTNFHLHSYILK-NYNCN*IKDNNPKKK 190
L+N +H+ K NYN N +NN KK
Sbjct: 84 LSNNTIHNNNYKYNYNNNNYNNNNYNKK 111
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 110 LTNFHLHSYILK-NYNCN*IKDNNPKKK 190
L+N +H+ K NYN N +NN KK
Sbjct: 84 LSNNTIHNNNYKYNYNNNNYNNNNYNKK 111
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 20.6 bits (41), Expect = 1.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Frame = +2
Query: 119 FHLHSYILKNYNC 157
+++H I+ YNC
Sbjct: 235 YYMHQQIMARYNC 247
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 20.2 bits (40), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 107 LLTNFHLHSYILKNYNCN*IKDNNPKK 187
L N+ +Y NYN N +NN KK
Sbjct: 85 LSNNYKYSNY--NNYNNNNYNNNNYKK 109
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 20.2 bits (40), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 107 LLTNFHLHSYILKNYNCN*IKDNNPKK 187
L N+ +Y NYN N +NN KK
Sbjct: 85 LSNNYKYSNY--NNYNNNNYNNNNYKK 109
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 20.2 bits (40), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 107 LLTNFHLHSYILKNYNCN*IKDNNPKK 187
L N+ +Y NYN N +NN KK
Sbjct: 85 LSNNYKYSNY--NNYNNNNYNNNNYKK 109
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 20.2 bits (40), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 107 LLTNFHLHSYILKNYNCN*IKDNNPKK 187
L N+ +Y NYN N +NN KK
Sbjct: 85 LSNNYKYSNY--NNYNNNNYNNNNYKK 109
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 19.4 bits (38), Expect = 4.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 161 NYNCNFLVYKNVSGN 117
NYN N+ Y N + N
Sbjct: 329 NYNNNYNNYNNYNNN 343
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 19.0 bits (37), Expect = 5.4
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -1
Query: 176 YYPLFNYNC 150
YYPL + NC
Sbjct: 167 YYPLDSQNC 175
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 19.0 bits (37), Expect = 5.4
Identities = 5/12 (41%), Positives = 10/12 (83%)
Frame = -1
Query: 158 YNCNFLVYKNVS 123
YN +F++Y ++S
Sbjct: 339 YNTDFIIYSSLS 350
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 19.0 bits (37), Expect = 5.4
Identities = 7/22 (31%), Positives = 10/22 (45%)
Frame = -1
Query: 167 LFNYNCNFLVYKNVSGNLLEVI 102
+F CN + Y GN+ I
Sbjct: 149 MFEALCNHIKYSTNKGNIRSAI 170
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 18.6 bits (36), Expect = 7.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Frame = -1
Query: 167 LFNYNCNFLV-----YKNVSGNLLEVIQCRCNY 84
+ NYNC LV + N N + + + Y
Sbjct: 442 VINYNCRSLVASVPFFANADSNFVSDVVTKLRY 474
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 18.6 bits (36), Expect = 7.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Frame = -1
Query: 167 LFNYNCNFLV-----YKNVSGNLLEVIQCRCNY 84
+ NYNC LV + N N + + + Y
Sbjct: 410 VINYNCRSLVASVPFFANADSNFVSDVVTKLRY 442
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 18.6 bits (36), Expect = 7.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 134 KNVSGNLLEVIQCRCN 87
+N G E +QC CN
Sbjct: 73 QNYLGICAEGMQCSCN 88
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 18.2 bits (35), Expect = 9.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 97 HCITSNKFPLTFLYTK 144
H +TSN F YTK
Sbjct: 227 HRLTSNTFDYDPRYTK 242
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.2 bits (35), Expect = 9.4
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -1
Query: 164 FNYNCNFLVYKN 129
+NYN N+ Y N
Sbjct: 92 YNYNNNYNNYNN 103
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 18.2 bits (35), Expect = 9.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Frame = -1
Query: 188 FFWDYYPLFN 159
F W ++P FN
Sbjct: 219 FLWLFWPSFN 228
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,336
Number of Sequences: 438
Number of extensions: 562
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used: 2550180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
- SilkBase 1999-2023 -