Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11o02
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...   188   5e-49
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...   166   2e-42
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    28   0.85 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   0.85 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   3.4  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   4.5  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   6.0  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   6.0  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    25   7.9  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.9  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   7.9  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    25   7.9  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    25   7.9  

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score =  188 bits (458), Expect = 5e-49
 Identities = 85/146 (58%), Positives = 106/146 (72%)
 Frame = +3

Query: 138 YIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISL 317
           Y   E G+  T DY+V+ +  G PIS  HDIPL+A+  + ++NMVVE+PRWT AK+EI+ 
Sbjct: 4   YTTREVGALNTLDYQVYVEKNGTPISSWHDIPLYANAEKTILNMVVEIPRWTQAKLEITK 63

Query: 318 GEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGARGDNDPVDV 497
              LNPIKQD KKG LRFV N FPH GYIWNYGA PQT+E+PN V P+T A+GD+DP+DV
Sbjct: 64  EATLNPIKQDTKKGKLRFVRNCFPHHGYIWNYGAFPQTYEDPNVVHPETKAKGDSDPLDV 123

Query: 498 IEIGERVASRGDVYPVKILGTLALID 575
            EIGE     G V  VK+LG +AL+D
Sbjct: 124 CEIGEARGYTGQVKQVKVLGVMALLD 149


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score =  166 bits (404), Expect = 2e-42
 Identities = 79/155 (50%), Positives = 100/155 (64%)
 Frame = +3

Query: 111 ATLKTQVRMYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRW 290
           A+L   +  +  +  G   TPD+RV+      PIS  HD+PL +DK     NMV E+PRW
Sbjct: 2   ASLAKNILQFRSKITGKLNTPDFRVYCYKNNKPISFFHDVPLTSDKDT--FNMVTEIPRW 59

Query: 291 TNAKMEISLGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGA 470
           T AK EISL    +PIKQD+K G LR+V N FP+ G+IWNYGALPQTWE+PN +D  T  
Sbjct: 60  TQAKCEISLTSPFHPIKQDLKNGKLRYVANSFPYHGFIWNYGALPQTWEDPNVIDSRTKM 119

Query: 471 RGDNDPVDVIEIGERVASRGDVYPVKILGTLALID 575
           +GD DP+DV EIG  +   G +  VK+LG L LID
Sbjct: 120 KGDGDPLDVCEIGGSIGYIGQIKQVKVLGALGLID 154


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 33  PVCRSIARRLCAVKEPTRVTCSINSTATLKTQVRMYIVEERGSPYTPD 176
           P    +A R C   +  R  C I   +T K+   +YI  E   P T +
Sbjct: 59  PEWAELADRACETMKTLRHPCIIKYLSTYKSSTHLYIATETVRPVTTE 106


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = -1

Query: 577 SSMRASVPRIFTGYTSPRLATRSPISMTSTGSLSPLAPVSGST*LGFS 434
           SS+  +VPR  T YTSP   T S I   +   + PL P S ST  G++
Sbjct: 820 SSILPTVPRT-TSYTSPYATTSSHI---TPADVHPLPPPSTSTTAGWN 863


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 153 RGSPYTPDY--RVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEA 326
           RG P T +    V+ K+  GP  P     +     + ++++V+E  +WTNA   + +  +
Sbjct: 301 RGEPVTLENGKTVYPKEVIGPSIPGSSFFIIHCPNELVIDLVIENHKWTNAPKPVCVIHS 360

Query: 327 LNP 335
           + P
Sbjct: 361 VTP 363


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 95  TSYTCRFFNSAQSSCYRPANRNSC 24
           TSY C+F NS  S  Y+ +  N C
Sbjct: 254 TSYYCKFLNSWFSGDYQQSVENLC 277


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 547 FTGYTSPRLATRSPISMTSTGSLSPL 470
           + GY  P L  +  +S  S GSLSP+
Sbjct: 59  YNGYAIPPLPRKYTVSSFSGGSLSPI 84


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 189 FKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEALNPIKQDVKK 356
           F+D+ G +  M +  L+  +  +++    +   WT  ++ + L  AL  IKQ VK+
Sbjct: 276 FRDDNGILIEMKE--LFTHQIPKMLRPYFKPNDWTPNRLLVVLEHALEWIKQTVKQ 329


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 204 GPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEA 326
           G ISP +D  LW +   + +  +VE     N K+ I L  A
Sbjct: 94  GRISP-NDSGLWMESQMKPLRRIVEFAHSQNQKIGIQLAHA 133


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 382 TLFTNRRLPFFTSCLIGLRASPR-LISIFALV 290
           T FT R + FF   ++G  ASP     +F+L+
Sbjct: 67  TNFTLRGIDFFVDTIVGFPASPETTFKVFSLL 98


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 379 LFTNRRLPFFTSCLIGLRASPRL 311
           L+T   L   T+CLI LR +P L
Sbjct: 157 LYTKSHLMLATACLIALRHNPSL 179


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 192 KDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEALNPIKQDVKKGNLRF 371
           +DEG  +  +H   +  D AQ +VN   E        +++   +AL P K       L+ 
Sbjct: 177 QDEGFIVISIHPGAVRTDSAQEIVNQHAEK---KPEILDLFAKQALTPEKS--ASDMLKV 231

Query: 372 VNNVFP-HRGYIWNY 413
           V+N+ P + G  +NY
Sbjct: 232 VDNLKPENNGLFYNY 246


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 276 EVPRWTNAKMEISLGEALNPIKQDVKKGNLRFVNN 380
           ++ +W++ K  I+ G  L P+ ++ KK  +   NN
Sbjct: 430 QIDKWSDGKALIATGSPLPPLNRNGKKYVISQCNN 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,898
Number of Sequences: 5004
Number of extensions: 46636
Number of successful extensions: 121
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)