Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11o02
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68882-7|CAD89727.1| 292|Caenorhabditis elegans Hypothetical pr... 226 1e-59
Z68882-6|CAA93107.3| 406|Caenorhabditis elegans Hypothetical pr... 226 1e-59
Z68882-5|CAD89726.1| 407|Caenorhabditis elegans Hypothetical pr... 226 1e-59
Z68882-4|CAD89728.1| 338|Caenorhabditis elegans Hypothetical pr... 226 1e-59
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 2.4
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical ... 28 4.1
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 9.5
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 9.5
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z68882-7|CAD89727.1| 292|Caenorhabditis elegans Hypothetical
protein C47E12.4d protein.
Length = 292
Score = 226 bits (552), Expect = 1e-59
Identities = 99/147 (67%), Positives = 121/147 (82%)
Frame = +3
Query: 135 MYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEIS 314
+Y ERGS Y+ DYRV+ K G +SP HDIPL+A+K +R+ NM+VE+PRWTNAKME++
Sbjct: 10 VYEAVERGSLYSLDYRVYIKGPQGIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMA 69
Query: 315 LGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGARGDNDPVD 494
E +PIKQD KKG RFV+N+FPH+GYIWNYGALPQTWE+PNHV PDTGA+GDNDP+D
Sbjct: 70 TKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPDTGAKGDNDPID 129
Query: 495 VIEIGERVASRGDVYPVKILGTLALID 575
VIE+G +VA RG V VK+LGTLALID
Sbjct: 130 VIEVGSKVAGRGAVLQVKVLGTLALID 156
>Z68882-6|CAA93107.3| 406|Caenorhabditis elegans Hypothetical
protein C47E12.4c protein.
Length = 406
Score = 226 bits (552), Expect = 1e-59
Identities = 99/147 (67%), Positives = 121/147 (82%)
Frame = +3
Query: 135 MYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEIS 314
+Y ERGS Y+ DYRV+ K G +SP HDIPL+A+K +R+ NM+VE+PRWTNAKME++
Sbjct: 124 VYEAVERGSLYSLDYRVYIKGPQGIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMA 183
Query: 315 LGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGARGDNDPVD 494
E +PIKQD KKG RFV+N+FPH+GYIWNYGALPQTWE+PNHV PDTGA+GDNDP+D
Sbjct: 184 TKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPDTGAKGDNDPID 243
Query: 495 VIEIGERVASRGDVYPVKILGTLALID 575
VIE+G +VA RG V VK+LGTLALID
Sbjct: 244 VIEVGSKVAGRGAVLQVKVLGTLALID 270
>Z68882-5|CAD89726.1| 407|Caenorhabditis elegans Hypothetical
protein C47E12.4b protein.
Length = 407
Score = 226 bits (552), Expect = 1e-59
Identities = 99/147 (67%), Positives = 121/147 (82%)
Frame = +3
Query: 135 MYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEIS 314
+Y ERGS Y+ DYRV+ K G +SP HDIPL+A+K +R+ NM+VE+PRWTNAKME++
Sbjct: 125 VYEAVERGSLYSLDYRVYIKGPQGIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMA 184
Query: 315 LGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGARGDNDPVD 494
E +PIKQD KKG RFV+N+FPH+GYIWNYGALPQTWE+PNHV PDTGA+GDNDP+D
Sbjct: 185 TKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPDTGAKGDNDPID 244
Query: 495 VIEIGERVASRGDVYPVKILGTLALID 575
VIE+G +VA RG V VK+LGTLALID
Sbjct: 245 VIEVGSKVAGRGAVLQVKVLGTLALID 271
>Z68882-4|CAD89728.1| 338|Caenorhabditis elegans Hypothetical
protein C47E12.4a protein.
Length = 338
Score = 226 bits (552), Expect = 1e-59
Identities = 99/147 (67%), Positives = 121/147 (82%)
Frame = +3
Query: 135 MYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEIS 314
+Y ERGS Y+ DYRV+ K G +SP HDIPL+A+K +R+ NM+VE+PRWTNAKME++
Sbjct: 56 VYEAVERGSLYSLDYRVYIKGPQGIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMA 115
Query: 315 LGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGARGDNDPVD 494
E +PIKQD KKG RFV+N+FPH+GYIWNYGALPQTWE+PNHV PDTGA+GDNDP+D
Sbjct: 116 TKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPDTGAKGDNDPID 175
Query: 495 VIEIGERVASRGDVYPVKILGTLALID 575
VIE+G +VA RG V VK+LGTLALID
Sbjct: 176 VIEVGSKVAGRGAVLQVKVLGTLALID 202
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 200 RRSYIAHARHSTMGRQSSTPRQHGSRST*MDQCENG--DQPRGGPQSYQAGRKERQPSVR 373
RRS R S M R +P H RS M +G + P GGP ++ + R P+ R
Sbjct: 227 RRSPPPRDRMSPMRRGGRSPPPHRRRSP-MGGRGSGANNMPLGGPNRFRRASRSRSPAGR 285
Query: 374 EQR 382
R
Sbjct: 286 RSR 288
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 378 NVFPHRGYIWNYGALPQTWE-NPNHVDPD 461
N +P GYIWNY Q WE +P++V P+
Sbjct: 401 NAYP--GYIWNYET--QEWEYDPSYVAPE 425
>AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical
protein F13C5.2 protein.
Length = 374
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 299 ENGDQPRGGPQSYQAGRKERQPSVREQRLPSSRLHLELR 415
+N D GGP + + GRK++ S E S LH EL+
Sbjct: 83 KNSDGGAGGPPA-KRGRKKKAKSESEDEAESDHLHDELK 120
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 339 KQDVKKGNLRFVNNVFPHRGYIW 407
++D +G LRF+ + PH GY++
Sbjct: 2162 RKDASRGRLRFLKDNEPHDGYMY 2184
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 339 KQDVKKGNLRFVNNVFPHRGYIW 407
++D +G LRF+ + PH GY++
Sbjct: 2162 RKDASRGRLRFLKDNEPHDGYMY 2184
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 233 TMGRQSSTPRQHGSRST*MDQCENGDQPRGGPQSYQAGRKERQPSVREQ 379
TM SS+ H S++ ENG+ P + ++GRK ++ +Q
Sbjct: 706 TMATTSSSFHHHSSQAGPSRDIENGEAPTATATTPKSGRKWKKSKAAKQ 754
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 233 TMGRQSSTPRQHGSRST*MDQCENGDQPRGGPQSYQAGRKERQPSVREQ 379
TM SS+ H S++ ENG+ P + ++GRK ++ +Q
Sbjct: 584 TMATTSSSFHHHSSQAGPSRDIENGEAPTATATTPKSGRKWKKSKAAKQ 632
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,577,633
Number of Sequences: 27780
Number of extensions: 276106
Number of successful extensions: 733
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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