Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11o01
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    66   4e-12
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    29   0.76 
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    28   1.0  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   4.0  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    26   5.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.3  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   7.1  

>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 34/142 (23%), Positives = 74/142 (52%)
 Frame = +3

Query: 207 QLLDELMGRHRNTDPNEKIKKPNWEDPEYCKYYMVKFCPHDLFVNTRADLGACPKVHDEE 386
           +++++LMG + +   +  +   ++ D + C+ ++   CPHD+F NT+ DLG CPK+H ++
Sbjct: 7   KIIEQLMGSNLSNFTSRGLV--HFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSDK 64

Query: 387 VKELFEKADPSYKKSQYVEEFLRFCKHMINDVERKIQKGKQRLDLMNSKPEGPPMTQAQT 566
           +K  +E+A  S+    Y  E+       + D+ER +    +R+D+  ++ E     + + 
Sbjct: 65  LKSDYERASYSH---DYGYEW-----DYLEDLERHVDDCNKRIDIAEARREKTKEEEERI 116

Query: 567 EKNQEQVSLLSEKITGLVQEAE 632
           ++    +      I  ++ E E
Sbjct: 117 DELMRDIIHTDHSIEVIITEME 138


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +3

Query: 288 EYCKYYMVKFCPHDLFVNTRADLGACPKVHDEEVKELFEKA-DPSYK----KSQYVEEFL 452
           EY KY  V +      +  R D G   +  + +  EL EK  D  Y     KS  V E +
Sbjct: 14  EY-KYSYVNYDKLKKEIKRRNDQGGWSEEDESDFVELLEKELDKVYSFQKNKSAEVMERI 72

Query: 453 RFCKHMINDVERKI 494
           RFC+   ++V R++
Sbjct: 73  RFCEEQTDEVVRRL 86


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 375 HDEEVKELFEKADPSYKKS-QYVEEFLRFCKHMINDVERKIQKGKQRLDLMNSKPEGPPM 551
           ++E  +E FE  DP Y+      +  L   KH I  V   + K  +   L+ S    P  
Sbjct: 33  NEEFFEEEFEIYDPFYRAELPCPKPSLSISKHSIAKVPSNVNKRLELQLLLTSGTFLPNS 92

Query: 552 TQAQTEKNQEQVSLLSEKITG 614
               +E+ ++   LLS  ITG
Sbjct: 93  RPYLSERVRKHTHLLSNSITG 113


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +3

Query: 384 EVKELFEKADPSYKKSQYVEEFLRFCKHMINDVERKIQKGKQRLDLMNSKPEGPPMTQAQ 563
           E++  +E +D  Y K  Y+   + +  +   D   K Q+ ++ L     KP   P  +A+
Sbjct: 556 ELRTCYELSD-KYNKDIYIGSTVCYSPNEWLDFFSKFQQPREALKFPEDKPRHIPCLEAR 614

Query: 564 TEKNQEQ 584
              N+ Q
Sbjct: 615 PSPNRIQ 621


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 606 FFPRAMKPVPDSSQSVLESLVGPLVLSSLD 517
           F P    PVP S++ +   L  P+V SS++
Sbjct: 129 FGPNPENPVPPSTEELANMLSNPMVQSSIN 158


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 527 VH*IQSLFSFLYFPFYIINHMF 462
           VH I S+F+F+YF    +N++F
Sbjct: 603 VHFIFSVFTFIYFSLVPLNNLF 624


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 383 FIVDFRTSTKISSSINEEIMRTELYHVIFAVLRIFPIRLFNFFVGIGVPVPAHQF 219
           F +D    T  S  +NE ++ + L  V+FA+L   P+ +    VG+  P+    +
Sbjct: 57  FALDMFAKTNNSFGVNEVLLASVLGSVVFALLSSQPLCI----VGVTGPITVFNY 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,989
Number of Sequences: 5004
Number of extensions: 44595
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)